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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE
NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFA
KVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV
VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSH
RVVDLAAYIASKGL

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3cmc:O 334 334 1.0000 1.0000 1.0000 0.0 3cmc:P, 3cmc:Q, 3cmc:R, 1dbv:O, 1dbv:P, 1dbv:Q, 1dbv:R, 2dbv:O, 2dbv:P, 2dbv:Q, 2dbv:R, 3dbv:O, 3dbv:P, 3dbv:Q, 3dbv:R, 4dbv:O, 4dbv:P, 4dbv:Q, 4dbv:R, 1gd1:O, 1gd1:P, 1gd1:Q, 1gd1:R, 1npt:O, 1npt:P, 1npt:Q, 1npt:R, 1nq5:O, 1nq5:Q, 1nq5:A, 1nq5:C, 1nqa:O, 1nqa:P, 1nqa:Q, 1nqa:R, 1nqo:O, 1nqo:Q, 1nqo:A, 1nqo:C
2 1hdg:O 332 324 0.6527 0.6566 0.6728 8.41e-156 1hdg:Q
3 2ep7:B 339 340 0.5988 0.5900 0.5882 3.89e-142 2ep7:A
4 4mvj:B 332 330 0.5808 0.5843 0.5879 1.77e-141 1dc4:A, 1dc4:B, 1dc6:A, 1dc6:B, 1gad:O, 1gad:P, 1gae:O, 1gae:P, 6io6:A, 4mvj:A, 4mvj:C, 4mvj:D, 4mvj:E, 4mvj:F, 4mvj:G, 4mvj:I, 4mvj:J, 4mvj:K, 4mvj:L, 4mvj:M, 4mvj:O, 4mvj:P, 6utm:A, 6utm:B, 6utn:A, 6utn:B, 6uto:A, 6uto:B, 2vyn:A, 2vyn:B, 2vyn:C, 2vyv:A, 2vyv:B, 2vyv:C, 5za0:A
5 4lsm:A 331 331 0.5719 0.5770 0.5770 1.22e-138 4lsm:B
6 8br4:A 339 336 0.5988 0.5900 0.5952 2.12e-138 8br4:B, 8br4:C, 8br4:D, 8br4:E, 8br4:F, 8br4:G, 8br4:H, 8br4:I, 8br4:J, 8br4:K, 8br4:L, 8br4:M, 8br4:N, 8br4:O, 8br4:P
7 3hja:A 334 334 0.6108 0.6108 0.6108 1.27e-137 3hja:B, 3hja:C, 3hja:D
8 1cer:O 331 333 0.6257 0.6314 0.6276 1.46e-137 1cer:P, 1cer:Q, 1cer:R, 1cer:A, 1cer:B, 1cer:C, 1cer:D, 2g82:O, 2g82:P, 2g82:Q, 2g82:R, 2g82:A, 2g82:B, 2g82:C, 2g82:D, 1vc2:A
9 4p8r:A 331 329 0.5719 0.5770 0.5805 3.77e-137 4p8r:B, 4p8r:C, 4p8r:D
10 3doc:A 335 328 0.5988 0.5970 0.6098 3.71e-134 3doc:B, 3doc:C, 3doc:D
11 6ghr:B 342 334 0.5868 0.5731 0.5868 8.88e-134 4boy:A, 4boy:B, 6gfo:A, 6gfo:B, 6gfo:C, 6gfo:D, 6gfp:A, 6gfp:B, 6gfq:B, 6gfq:A, 6gfr:A, 6gfr:B, 6gg7:B, 6gg7:A, 6ghl:A, 6ghl:D, 6ghl:B, 6ghl:C, 6ghr:D, 6ghr:A, 6ghr:C, 6gve:D, 6gve:A, 6gve:E, 6gve:F, 6gve:I, 6gve:K, 6gve:N, 6gve:O, 3zcx:A, 3zcx:B, 3zdf:B, 3zdf:A
12 8de5:A 338 332 0.5868 0.5799 0.5904 3.10e-133
13 8oha:B 336 332 0.5449 0.5417 0.5482 1.10e-132 8oha:A, 8oha:C, 8oha:D, 8oha:E, 8oha:F, 8oha:G, 8oha:H
14 1nbo:O 337 334 0.5898 0.5846 0.5898 1.65e-132 1jn0:O, 1jn0:A, 1jn0:B, 1nbo:A, 1nbo:B, 2pkq:P, 2pkq:R, 2pkq:S, 2pkr:O, 2pkr:R, 2pkr:P, 2pkr:Q, 2pkr:A, 2pkr:B, 2pkr:C, 2pkr:D, 2pkr:H, 2pkr:I, 2pkr:L, 2pkr:M, 7q53:P, 7q53:R, 7q54:R, 7q54:P, 7q54:B, 7q54:D, 7q55:P, 7q55:R, 7q55:B, 7q55:D, 7q55:F, 7q55:H, 7q55:J, 7q55:L, 7q56:J, 7q56:L, 7q56:B, 7q56:D, 7q56:R, 7q56:P, 7q56:H, 7q56:F, 7q57:P, 7q57:R, 7q57:B, 7q57:D, 7q57:H, 7q57:F, 7q57:J, 7q57:L, 7q57:N, 7q57:T, 1rm3:O, 1rm3:A, 1rm3:B, 1rm4:O, 1rm4:A, 1rm4:B, 1rm5:O, 1rm5:A, 1rm5:B
15 3b1j:A 338 334 0.5988 0.5917 0.5988 2.58e-132 3b1j:B, 3b1k:A, 3b1k:H, 3b1k:B, 3b1k:G, 3b20:A, 3b20:B, 3b20:O, 3b20:P, 3b20:Q, 3b20:R, 2d2i:A, 2d2i:B, 2d2i:O, 2d2i:P, 2d2i:Q, 2d2i:R, 2duu:A, 2duu:B, 2duu:O, 2duu:P, 2duu:Q, 2duu:R
16 8hrq:B 336 334 0.6168 0.6131 0.6168 3.10e-132 8hro:A, 8hro:B, 8hrp:A, 8hrp:B, 8hrp:C, 8hrp:D, 8hrp:E, 8hrp:F, 8hrp:G, 8hrp:H, 8hrq:A, 8hrr:A, 8hrr:B, 8hrs:A, 8hrs:B, 8hrs:C, 8hrs:D, 8hrt:A, 8hrt:B, 8hrt:C, 8hrt:D
17 3gnq:C 335 334 0.5808 0.5791 0.5808 2.14e-130 3gnq:B, 3gnq:D, 3gnq:E, 3gnq:F, 3gnq:G, 3gnq:H
18 3l0d:A 332 334 0.5569 0.5602 0.5569 6.02e-129 3l0d:B
19 7xzg:A 334 332 0.5569 0.5569 0.5602 5.72e-128 7xzg:B, 7xzg:C, 7xzg:D
20 3cif:A 338 335 0.5389 0.5325 0.5373 2.49e-126 3cif:B, 3cif:C, 3cif:D, 3cps:A, 3cps:B, 8pvf:A, 1vsv:A, 1vsv:B, 1vsv:C, 1vsv:D
21 1obf:O 335 334 0.5659 0.5642 0.5659 6.27e-126 1obf:P
22 7q54:C 368 336 0.6018 0.5462 0.5982 1.27e-125 2pkq:O, 2pkq:Q, 2pkq:T, 7q53:O, 7q53:Q, 7q54:Q, 7q54:O, 7q54:A, 7q55:O, 7q55:Q, 7q55:A, 7q55:C, 7q55:E, 7q55:G, 7q55:I, 7q55:K, 7q56:K, 7q56:E, 7q56:I, 7q56:A, 7q56:G, 7q56:C, 7q56:Q, 7q56:O, 7q57:O, 7q57:Q, 7q57:A, 7q57:C, 7q57:G, 7q57:E, 7q57:I, 7q57:K, 7q57:M, 7q57:S
23 4k9d:A 338 336 0.5479 0.5414 0.5446 1.18e-124 4k9d:B, 4k9d:C, 4k9d:D, 4k9d:E, 4k9d:F, 4k9d:G, 4k9d:H
24 6nlx:C 335 327 0.5509 0.5493 0.5627 2.27e-124 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
25 6m61:O 336 333 0.5359 0.5327 0.5375 2.35e-123 6ade:A, 5ddi:P, 5ddi:R, 5ddi:S, 6iq6:A, 6iq6:B, 6iq6:C, 6iq6:D, 6iq6:E, 1j0x:P, 1j0x:R, 6lgj:A, 6lgj:B, 6lgj:C, 6lgj:D, 6lgk:A, 6lgk:B, 6lgk:C, 6lgm:A, 6lgm:B, 6lgm:C, 6m61:Q, 6m61:P, 4o59:O, 4o59:P, 4o59:R, 4o59:Q, 4o63:P, 4o63:Q, 4o63:R, 8p5f:AAA, 8p5f:DDD, 8p5f:EEE, 8p5f:GGG, 5tso:P, 5tso:R, 5tso:S, 7u5m:A, 7u5m:B, 7u5m:C, 7u5m:D, 1u8f:P, 1u8f:Q, 1u8f:R, 4wnc:O, 4wnc:E, 4wnc:A, 4wnc:B, 4wnc:C, 4wnc:D, 4wni:O, 4wni:A, 4wni:B, 1znq:O, 1znq:P, 1znq:R, 1znq:Q
26 3pym:A 332 331 0.5449 0.5482 0.5498 1.14e-122 3pym:B
27 5m6d:A 346 334 0.5629 0.5434 0.5629 8.14e-122 6fzh:A, 6fzh:B, 6ite:P, 6ite:Q, 6ite:R, 6ite:O
28 3k2b:A 337 333 0.5928 0.5875 0.5946 3.76e-121 3k2b:B, 3k2b:C, 3k2b:D, 3k2b:E, 3k2b:F, 3k2b:G, 3k2b:H, 3k2b:O, 3k2b:Q, 6kez:A, 6kez:B, 6kez:C, 6kez:D, 6kez:E, 6kez:F, 6kez:G, 6kez:H, 3qv1:A, 3qv1:D, 3qv1:B, 3qv1:C, 3qv1:F, 3qv1:E, 3rvd:A, 3rvd:D, 3rvd:B, 3rvd:C, 3rvd:O, 3rvd:Q, 3rvd:F, 3rvd:G, 3rvd:E, 3rvd:H
29 3gpd:R 334 333 0.5269 0.5269 0.5285 1.24e-120 3gpd:G
30 1ywg:O 337 333 0.5389 0.5341 0.5405 1.62e-120 2b4r:O, 2b4r:P, 2b4r:Q, 2b4r:R, 2b4t:O, 2b4t:P, 2b4t:Q, 2b4t:R, 1ywg:P, 1ywg:Q, 1ywg:R
31 6fzi:B 332 336 0.5629 0.5663 0.5595 3.86e-120 6fzi:A, 6fzi:C, 6fzi:D
32 6m5x:O 334 332 0.5299 0.5299 0.5331 5.67e-120 6m5x:R, 6m5x:P, 6m5x:Q
33 3dmt:A 359 351 0.5449 0.5070 0.5185 2.09e-118 3dmt:B, 3dmt:C, 3dmt:D, 3ids:D, 1k3t:C, 1ml3:B, 1ml3:C, 1ml3:D, 1qxs:C, 1qxs:D, 1qxs:A, 1qxs:B, 2x0n:A, 2x0n:B, 2x0n:O, 2x0n:P, 2x0n:Q, 2x0n:R
34 7jwk:C 333 333 0.5389 0.5405 0.5405 4.03e-118 7jwk:A, 7jwk:B, 7jwk:D
35 5utm:A 345 335 0.5479 0.5304 0.5463 4.90e-118 5jy6:A, 5jy6:B, 5jy6:C, 5jy6:D, 5jya:A, 5jya:B, 5jya:C, 5jya:D, 5jye:A, 5jye:C, 4qx6:A, 4qx6:B, 4qx6:C, 4qx6:D, 5utl:A, 5utl:B, 5utl:C, 5utl:D, 5utm:B, 5utm:C, 5utm:D, 5v8x:A, 5v8x:B, 5v8x:C, 5v8x:D, 5y37:A, 5y37:B
36 1dss:G 333 325 0.5389 0.5405 0.5538 6.88e-118 1dss:R, 1gpd:G, 1gpd:R, 1ihx:A, 1ihx:B, 1ihx:C, 1ihx:D, 1ihy:A, 1ihy:B, 1ihy:C, 1ihy:D, 1szj:G, 1szj:R
37 6px2:A 332 333 0.5449 0.5482 0.5465 1.37e-117 6px2:B, 6px2:C, 6px2:D, 6px2:E, 6px2:F, 6px2:G, 6px2:H
38 1a7k:A 358 351 0.5509 0.5140 0.5242 4.46e-117 1a7k:B, 1a7k:C, 1a7k:D, 1gyp:A, 1gyp:B, 1gyp:C, 1gyp:D, 1gyq:A, 1gyq:B, 1gyq:C, 1gyq:D, 1i32:A, 1i32:B, 1i32:C, 1i32:D, 1i32:E, 1i32:F, 1i33:A, 1i33:B, 1i33:C, 1i33:D, 1i33:E, 1i33:F
39 2vyn:D 334 333 0.5150 0.5150 0.5165 4.64e-117 2vyv:D
40 3h9e:P 337 333 0.5120 0.5074 0.5135 7.36e-117 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
41 7zq3:R 348 335 0.5749 0.5517 0.5731 1.24e-116 7zq3:O, 7zq4:O, 7zq4:R, 7zqk:O, 7zqk:R
42 6ok4:A 334 330 0.5150 0.5150 0.5212 6.15e-116 6ok4:B, 6ok4:C, 6ok4:D, 6wyc:A, 6wyc:B, 6wyc:C, 6wyc:D, 6x2e:A, 6x2e:C, 6x2e:D
43 5vmt:B 334 337 0.5299 0.5299 0.5252 2.98e-114 5vmt:A, 5vmt:C, 5vmt:D, 5vmt:F, 5vmt:G, 5vmt:H
44 3e5r:O 336 333 0.5060 0.5030 0.5075 3.56e-114 3e5r:A, 3e5r:B, 3e5r:C, 3v1y:O, 3v1y:A, 3v1y:B, 3v1y:C
45 2i5p:O 309 330 0.5000 0.5405 0.5061 5.99e-113 2i5p:P
46 7bew:A 330 330 0.4970 0.5030 0.5030 2.14e-112 7bex:A
47 6qun:O 334 333 0.5150 0.5150 0.5165 6.36e-112 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
48 3lvf:P 338 336 0.5120 0.5059 0.5089 4.00e-107 3hq4:R, 3hq4:O, 3hq4:P, 3hq4:Q, 3k73:Q, 3k73:O, 3k73:P, 3k73:R, 3k9q:Q, 3k9q:O, 3k9q:P, 3k9q:R, 3ksd:Q, 3ksd:R, 3ksd:O, 3ksd:P, 3ksz:O, 3ksz:P, 3ksz:R, 3ksz:Q, 3kv3:O, 3kv3:Q, 3kv3:R, 3kv3:P, 3l4s:Q, 3l4s:P, 3l4s:O, 3l4s:R, 3l6o:Q, 3l6o:P, 3l6o:R, 3l6o:O, 3lc1:P, 3lc1:R, 3lc1:O, 3lc1:Q, 3lc2:O, 3lc2:Q, 3lc2:R, 3lc2:P, 3lvf:R, 3lvf:O, 3lvf:Q, 5t73:A, 5t73:B, 5t73:C, 5t73:D, 3vaz:P, 3vaz:R, 3vaz:O, 3vaz:Q, 3vaz:B, 3vaz:A
49 3sth:C 340 334 0.5060 0.4971 0.5060 1.46e-106 3sth:A, 3sth:B, 3sth:D
50 5ld5:C 342 339 0.5120 0.5000 0.5044 3.05e-102 5ld5:A, 5ld5:B, 5ld5:D
51 7c5o:O 338 326 0.5000 0.4941 0.5123 9.67e-99 7c5f:O, 7c5f:P, 7c5f:Q, 7c5f:R, 7c5g:O, 7c5g:P, 7c5g:Q, 7c5g:R, 7c5h:O, 7c5h:P, 7c5h:Q, 7c5h:R, 7c5i:O, 7c5i:P, 7c5i:Q, 7c5i:R, 7c5j:O, 7c5j:P, 7c5j:Q, 7c5j:R, 7c5k:O, 7c5k:P, 7c5k:Q, 7c5k:R, 7c5l:O, 7c5l:P, 7c5l:Q, 7c5l:R, 7c5m:O, 7c5m:P, 7c5m:Q, 7c5m:R, 7c5n:O, 7c5n:P, 7c5n:Q, 7c5n:R, 7c5o:P, 7c5o:Q, 7c5o:R, 7c5p:O, 7c5p:P, 7c5p:Q, 7c5p:R, 7c5q:O, 7c5q:P, 7c5q:Q, 7c5q:R, 7c5r:O, 7c5r:P, 7c5r:Q, 7c5r:R, 7c7k:O, 7c7k:P, 7c7k:Q, 7c7k:R
52 7www:A 336 332 0.4910 0.4881 0.4940 4.20e-98
53 8hmn:D 340 333 0.4910 0.4824 0.4925 1.78e-97 8hmn:A, 8hmn:B, 8hmn:C, 6iqm:A, 6iqm:B, 6iqm:C, 6iqm:D
54 9iil:A 341 337 0.4431 0.4340 0.4392 3.03e-96 9iil:B, 9iil:C, 9iil:D, 9iim:A, 9iim:C, 9iim:B, 9iim:D, 9ij6:A, 9ij6:C, 9ij6:B, 9ij6:D, 8zn1:A, 8zn1:C, 8zn1:B, 8zn1:D, 8zn4:A, 8zn4:B, 8zn4:C, 8zn4:D, 8zoz:A, 8zoz:C, 8zoz:B, 8zoz:D
55 2xf8:M 327 334 0.4371 0.4465 0.4371 7.50e-92 2xf8:A, 2xf8:C, 2xf8:E, 2xf8:G, 2xf8:I, 2xf8:K, 2xf8:O
56 5vmt:E 293 330 0.4671 0.5324 0.4727 3.74e-89
57 8jb1:A 468 338 0.3922 0.2799 0.3876 6.10e-65 8jb1:B
58 3tz6:A 342 137 0.1168 0.1140 0.2847 3.11e-05 3vos:A
59 3wyc:A 327 40 0.0539 0.0550 0.4500 0.003 5gz3:A, 5gz3:B, 5gz6:A, 3wyc:B
60 2czc:A 334 261 0.1856 0.1856 0.2375 0.011 2czc:B, 2czc:C, 2czc:D
61 3kv6:D 448 130 0.0868 0.0647 0.2231 0.035 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
62 6vhy:C 540 241 0.1766 0.1093 0.2448 0.15 6vhv:A, 6vhw:A, 6vhw:B, 6vhx:A, 6vhx:B, 6vhy:D, 6vhy:A, 6vhy:B, 6vhz:A, 6vhz:B
63 3wgy:B 324 37 0.0419 0.0432 0.3784 0.62 3wgq:A, 3wgz:B
64 1cf2:P 336 265 0.1796 0.1786 0.2264 0.64 1cf2:R, 1cf2:O, 1cf2:Q
65 1dap:A 320 30 0.0329 0.0344 0.3667 2.0 1dap:B, 2dap:A, 3dap:A, 3dap:B, 1f06:A, 1f06:B, 5loa:A, 5loa:B
66 4cmd:A 322 31 0.0359 0.0373 0.3871 6.2 4cmd:B, 4cmf:A
67 5e3x:A 489 31 0.0389 0.0266 0.4194 7.8
68 2yyy:A 342 29 0.0419 0.0409 0.4828 8.0 2yyy:B
69 3wbb:A 297 62 0.0479 0.0539 0.2581 8.1 3wbb:B, 3wbb:C, 3wbf:A, 3wbf:B, 3wbf:C
70 3vcy:A 419 47 0.0569 0.0453 0.4043 9.8 3vcy:B, 3vcy:C, 3vcy:D
71 6g1h:A 342 34 0.0359 0.0351 0.3529 9.9 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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