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BioLiP
>protein
AVKNCSHLECFYNSRANVSCMWSHLNVTTCHVHAKSNLRHWNKTCELTLVRQASWACNLILGSFPESQSLTSVDLLDINV
VCWEEKGWRRVKTCDFHPFDNLRLVAPHSLQVLHIDTQRCNISWKVSQVSHYIEPYLEFEARRRLLGHSWEDASVLSLKQ
RQQWLFLEMLIPSTSYEVQVRVKAQRNNTGTWSPWSQPLTFRTRPA

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6dg5:B 206 206 1.0000 1.0000 1.0000 1.58e-154
2 2erj:B 204 202 0.5777 0.5833 0.5891 4.53e-82 2erj:F, 5m5e:B, 7s2s:B, 7s2s:D
3 2gys:B 406 103 0.1602 0.0813 0.3204 4.09e-05
4 2gys:B 406 95 0.1456 0.0739 0.3158 0.002
5 4nzd:A 210 212 0.2233 0.2190 0.2170 2.52e-04 4nzd:B, 4nzd:C, 3tgx:A, 3tgx:C, 3tgx:E, 3tgx:G, 3tgx:I, 3tgx:K, 3tgx:O, 3tgx:M
6 6h41:A 309 162 0.1942 0.1294 0.2469 0.048 3qt2:B
7 4rtb:A 429 90 0.0971 0.0466 0.2222 0.44
8 7t6b:R 264 32 0.0631 0.0492 0.4062 0.49
9 1civ:A 374 39 0.0680 0.0374 0.3590 0.78
10 4r3a:A 318 26 0.0534 0.0346 0.4231 3.2 4r38:A, 4r38:B, 4r38:C, 4r38:D, 4r39:A, 4r39:B, 4r39:C, 4r39:D
11 4r3a:B 278 26 0.0534 0.0396 0.4231 4.0
12 7b5f:G 133 75 0.0922 0.1429 0.2533 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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