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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVINHDAVPVWPQPEPADATQALAVRFKPQLDVVNGCQPYPAVDPQGNTSGGLKPSAAACRDMSKAQVYSRSGTYNGYYA
IMYSWYMPKDSIGHRHDWENVVVWLDNAASANIVALSASAHSGYKKSFPADKSYLDGITAKISYKSTWPLDHELGFTTSA
GKQQPLIQWEQMTQAARDALESTDFGNANVPFKSNFQDKLVKAFFQ

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5no9:B 212 212 1.0000 0.9717 0.9717 1.60e-151 3gnz:P, 5nnw:A, 5nnw:B, 5nnw:C, 5nnw:D, 5no9:A, 5no9:C, 5no9:D, 6qbd:A, 6qbd:B
2 3st1:A 212 204 0.4078 0.3962 0.4118 1.11e-42
3 6hq8:A 1138 41 0.0680 0.0123 0.3415 0.55 6hq8:B
4 7arc:F 430 54 0.0825 0.0395 0.3148 2.5 7ard:F
5 7trc:K 330 45 0.0777 0.0485 0.3556 3.2 7bgb:K
6 3jqp:D 269 54 0.0777 0.0595 0.2963 6.1 3jqp:A, 3jqp:B, 3jqp:C, 3jqp:E, 3jqp:F, 3jqq:A, 3jqq:B, 3jqq:C, 3jqq:D, 3jqq:E, 3jqq:F, 3jqr:A, 2ok7:A, 2ok7:B, 2ok7:C, 2ok7:D, 2ok7:E, 2ok7:F, 2ok8:A, 2ok8:B, 2ok8:C, 2ok8:D
7 7pfp:A 563 73 0.0777 0.0284 0.2192 6.1 7pfp:C, 7q3n:U
8 4wrn:A 693 73 0.0777 0.0231 0.2192 6.7 7pfp:B
9 4wrn:B 663 73 0.0777 0.0241 0.2192 7.2
10 7nvo:B 282 38 0.0631 0.0461 0.3421 8.6 7nvo:b
11 7ttn:E 528 38 0.0631 0.0246 0.3421 9.6 8i1u:B, 8i1u:J, 7nvl:B, 7nvl:b, 7nvm:B, 7nvm:b, 7nvn:B, 7nvn:b, 8sfe:b, 8sfe:B, 8sff:B, 8sff:b, 8sg8:B, 8sg8:b, 8sg9:B, 8sg9:b, 8sgc:B, 8sgc:b, 8sgl:B, 8sgl:b, 8sgq:B, 8sgq:b, 8sh9:B, 8sh9:b, 8sha:B, 8sha:b, 8shd:B, 8shd:b, 8she:B, 8she:b, 8shf:B, 8shf:b, 8shg:B, 8shg:b, 8shl:B, 8shl:b, 8shn:B, 8shn:b, 8sho:B, 8sho:b, 8shp:B, 8shp:b, 8shq:B, 8shq:b, 8sht:B, 8sht:b, 7trg:E, 7ttt:E, 7tub:E, 7x0s:B, 7x0s:L, 7x0v:B, 7x0v:L, 7x3j:B, 7x3j:b, 7x3u:b, 7x3u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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