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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEED
PAHPRYIQTVWGLGYVFVPDG

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6lxn:A 110 101 1.0000 0.9182 1.0000 4.49e-72 6lxn:B
2 4nhj:A 102 98 0.3366 0.3333 0.3469 4.62e-17 4nhj:B
3 2z33:A 104 96 0.3168 0.3077 0.3333 4.16e-12 1gxp:A, 1gxp:B, 1gxp:E, 1gxp:F
4 6cqg:A 98 74 0.2772 0.2857 0.3784 4.96e-12
5 2gwr:A 225 94 0.3168 0.1422 0.3404 1.14e-11 3nhz:B, 3nhz:C, 3nhz:D
6 2oqr:A 226 66 0.2475 0.1106 0.3788 1.53e-09
7 4kny:B 226 97 0.2772 0.1239 0.2887 2.73e-09 4kfc:A, 4kfc:B, 4kny:A, 1zh2:A, 1zh2:B, 1zh4:A, 1zh4:B
8 4b09:A 218 78 0.2673 0.1239 0.3462 5.77e-08 4b09:B, 4b09:C, 4b09:D, 4b09:E, 4b09:F, 4b09:G, 4b09:I, 4b09:K
9 1ys6:B 227 95 0.3069 0.1366 0.3263 5.96e-08 1ys6:A, 1ys7:A, 1ys7:B
10 8hih:O 217 93 0.2772 0.1290 0.3011 1.16e-07 8hih:P, 8hih:N, 8hih:Q
11 5x5l:E 98 72 0.2178 0.2245 0.3056 1.41e-06 5x5l:B, 5x5l:H, 5x5l:A
12 8b4b:W 110 79 0.2376 0.2182 0.3038 1.71e-05 8b4b:X, 8b4b:Z, 8b4b:Y, 8b4c:D, 8b4d:B, 8b4d:C, 8b4d:D, 8b4e:A, 8b4e:B
13 8jo2:H 219 98 0.2475 0.1142 0.2551 6.12e-04 8jo2:I, 4s04:A, 4s04:B, 4s04:E, 4s04:F, 4s05:A, 4s05:B, 3w9s:A, 3w9s:B
14 7lza:A 219 81 0.2475 0.1142 0.3086 7.90e-04 7lz9:A
15 7e1b:A 209 88 0.2376 0.1148 0.2727 0.024 7e1b:B, 7e1b:C, 7e1b:H, 7e1b:D, 7e1b:E, 7e1b:F, 7e1b:G, 7e1h:A, 7e1h:B, 7e1h:E
16 5ju7:A 107 95 0.2475 0.2336 0.2632 0.35
17 3mcm:A 368 49 0.1881 0.0516 0.3878 1.1 3mcn:A
18 3mco:A 397 49 0.1881 0.0479 0.3878 1.3 3mcn:B, 3mco:B
19 8sl9:A 422 49 0.1881 0.0450 0.3878 1.4 4pzv:A
20 1c9k:B 180 39 0.1386 0.0778 0.3590 1.8 1c9k:A, 1c9k:C
21 6yxx:ED 598 61 0.1782 0.0301 0.2951 2.8 7aoi:XC, 6yxy:ED
22 6s6z:A 1083 26 0.1188 0.0111 0.4615 3.6 6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
23 5dll:A 854 47 0.1386 0.0164 0.2979 3.9
24 4zht:A 384 61 0.2079 0.0547 0.3443 4.1 4zht:B, 4zht:C, 4zht:D
25 2ptf:A 200 51 0.1683 0.0850 0.3333 4.3 2ptf:B
26 2icp:A 87 79 0.2277 0.2644 0.2911 5.4
27 7msk:A 421 21 0.0792 0.0190 0.3810 7.3 7msk:B
28 7btk:C 1023 23 0.1089 0.0108 0.4783 9.9 5a1a:A, 5a1a:B, 5a1a:C, 5a1a:D, 7brs:A, 7brs:B, 7brs:C, 7brs:D, 7btk:A, 7btk:B, 7btk:D, 6cvm:A, 6cvm:B, 6cvm:C, 6cvm:D, 3czj:A, 3czj:B, 3czj:C, 3czj:D, 1dp0:A, 1dp0:B, 1dp0:C, 1dp0:D, 4duv:A, 4duv:B, 4duv:C, 4duv:D, 4duw:A, 4duw:B, 4duw:C, 4duw:D, 4dux:A, 4dux:B, 4dux:C, 4dux:D, 3dym:A, 3dym:B, 3dym:C, 3dym:D, 3dyo:A, 3dyo:B, 3dyo:C, 3dyo:D, 3dyp:A, 3dyp:B, 3dyp:C, 3dyp:D, 3e1f:1, 3e1f:2, 3e1f:3, 3e1f:4, 1f4a:A, 1f4a:B, 1f4a:C, 1f4a:D, 1f4h:A, 1f4h:B, 1f4h:C, 1f4h:D, 1hn1:A, 1hn1:B, 1hn1:C, 1hn1:D, 3i3b:A, 3i3b:B, 3i3b:C, 3i3b:D, 3i3d:A, 3i3d:B, 3i3d:C, 3i3d:D, 3i3e:A, 3i3e:B, 3i3e:C, 3i3e:D, 3iap:A, 3iap:B, 3iap:C, 3iap:D, 3iaq:A, 3iaq:B, 3iaq:C, 3iaq:D, 3j7h:A, 3j7h:B, 3j7h:C, 3j7h:D, 1jyn:A, 1jyn:B, 1jyn:C, 1jyn:D, 1jyv:A, 1jyv:B, 1jyv:C, 1jyv:D, 1jyw:A, 1jyw:B, 1jyw:C, 1jyw:D, 1jyx:A, 1jyx:B, 1jyx:C, 1jyx:D, 1jz2:A, 1jz2:B, 1jz2:C, 1jz2:D, 1jz3:A, 1jz3:B, 1jz3:C, 1jz3:D, 1jz4:A, 1jz4:B, 1jz4:C, 1jz4:D, 1jz5:A, 1jz5:B, 1jz5:C, 1jz5:D, 1jz6:A, 1jz6:B, 1jz6:C, 1jz6:D, 1jz7:A, 1jz7:B, 1jz7:C, 1jz7:D, 1jz8:A, 1jz8:B, 1jz8:C, 1jz8:D, 6kuz:A, 6kuz:B, 6kuz:C, 6kuz:D, 3muy:1, 3muy:2, 3muy:3, 3muy:4, 3muz:1, 3muz:2, 3muz:3, 3muz:4, 3mv0:1, 3mv0:2, 3mv0:3, 3mv0:4, 3mv1:1, 3mv1:2, 3mv1:3, 3mv1:4, 1px3:A, 1px3:B, 1px3:C, 1px3:D, 1px4:A, 1px4:B, 1px4:C, 1px4:D, 3sep:A, 3sep:B, 3sep:C, 3sep:D, 3t08:A, 3t08:B, 3t08:C, 3t08:D, 3t09:A, 3t09:B, 3t09:C, 3t09:D, 3t0a:A, 3t0a:B, 3t0a:C, 3t0a:D, 3t0b:A, 3t0b:B, 3t0b:C, 3t0b:D, 3t0d:A, 3t0d:B, 3t0d:C, 3t0d:D, 3t2o:A, 3t2o:B, 3t2o:C, 3t2o:D, 3t2p:A, 3t2p:B, 3t2p:C, 3t2p:D, 3t2q:A, 3t2q:B, 3t2q:C, 3t2q:D, 6tsh:A, 6tsh:B, 6tsh:C, 6tsh:D, 6tsk:A, 6tsk:B, 6tsk:C, 6tsk:D, 4ttg:A, 4ttg:B, 4ttg:C, 4ttg:D, 6tte:A, 6tte:B, 6tte:C, 6tte:D, 4v40:A, 4v40:B, 4v40:C, 4v40:D, 4v40:E, 4v40:F, 4v40:G, 4v40:H, 4v40:I, 4v40:J, 4v40:K, 4v40:L, 4v40:M, 4v40:N, 4v40:O, 4v40:P, 4v41:A, 4v41:B, 4v41:C, 4v41:D, 4v41:E, 4v41:F, 4v41:G, 4v41:H, 4v41:I, 4v41:J, 4v41:K, 4v41:L, 4v41:M, 4v41:N, 4v41:O, 4v41:P, 4v44:A, 4v44:B, 4v44:C, 4v44:D, 4v44:E, 4v44:F, 4v44:G, 4v44:H, 4v44:I, 4v44:J, 4v44:K, 4v44:L, 4v44:M, 4v44:N, 4v44:O, 4v44:P, 4v45:A, 4v45:B, 4v45:C, 4v45:D, 4v45:E, 4v45:F, 4v45:G, 4v45:H, 4v45:I, 4v45:J, 4v45:K, 4v45:L, 4v45:M, 4v45:N, 4v45:O, 4v45:P, 3vd3:A, 3vd3:B, 3vd3:C, 3vd3:D, 3vd4:A, 3vd4:B, 3vd4:C, 3vd4:D, 3vd5:A, 3vd5:C, 3vd5:D, 3vd5:B, 3vd7:A, 3vd7:B, 3vd7:C, 3vd7:D, 3vd9:A, 3vd9:B, 3vd9:C, 3vd9:D, 3vda:A, 3vda:B, 3vda:C, 3vda:D, 3vdb:A, 3vdb:B, 3vdb:C, 3vdb:D, 3vdc:A, 3vdc:B, 3vdc:C, 3vdc:D, 8vt0:A, 8vt0:B, 8vt0:C, 8vt0:D, 6x1q:A, 6x1q:B, 6x1q:C, 6x1q:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218