Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDESSGWRHQRLPDYKAGRPPMPEELHDEMPA
LRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQ
QLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGN
LQQLRLV

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3zd9:A 249 249 1.0000 0.9920 0.9920 0.0 3zd8:A, 3zd8:B, 3zda:A, 3zdb:A, 3zdc:A, 3zdd:A
2 1taq:A 807 181 0.2470 0.0756 0.3370 1.68e-23 4bwj:A, 4bwm:A, 4c8k:A, 4c8l:A, 4c8m:A, 4c8n:A, 4c8o:A, 4cch:A, 4df4:A, 4df8:A, 4dfj:A, 4dfk:A, 4dfm:A, 4dfp:A, 4dle:A, 4dlg:A, 5e41:A, 4elt:A, 4elu:A, 4elv:A, 6fbc:A, 6fbd:A, 6fbe:A, 6fbf:A, 6fbg:A, 6fbh:A, 6fbi:A, 2ktq:A, 3ktq:A, 4ktq:A, 5ktq:A, 3lwl:A, 3lwm:A, 3m8r:A, 3m8s:A, 4n5s:A, 5nkl:A, 5o7t:A, 3ojs:A, 3oju:A, 7owf:A, 5oxj:A, 3po4:A, 3po5:A, 3py8:A, 6q4u:A, 6q4v:A, 1qss:A, 1qsy:A, 1qtm:A, 3rr7:A, 3rr8:A, 3rrg:A, 3rrh:A, 3rtv:A, 3sv3:A, 3sv4:A, 3syz:A, 3sz2:A, 5szt:A, 3t3f:A, 1tau:A, 5w6k:A, 5w6q:C, 5w6q:G, 4xiu:A, 5ytc:A, 5ytd:A, 5yte:A, 5ytf:A, 5ytg:A, 5yth:A, 5z3n:A
3 6vde:A 860 221 0.2389 0.0686 0.2670 6.12e-15 6vde:B
4 6c33:A 317 253 0.2713 0.2114 0.2648 1.90e-10 6c34:A, 6c35:A, 6c36:A
5 5hnk:A 272 234 0.2186 0.1985 0.2308 1.32e-08 5hml:A, 5hml:B, 5hmm:A, 5hnk:B, 5hp4:A, 1ut5:A
6 5fv7:A 283 170 0.1862 0.1625 0.2706 0.015 5fv7:B
7 5k97:A 341 73 0.1053 0.0762 0.3562 0.058 5kse:A, 3q8k:A, 3q8l:A, 3q8m:B, 3q8m:A, 5um9:A
8 5zod:A 260 73 0.1053 0.1000 0.3562 0.064
9 5zog:A 316 73 0.1053 0.0823 0.3562 0.068 1ul1:X, 5zoe:A, 5zof:A
10 2ihn:A 299 119 0.1215 0.1003 0.2521 0.44
11 4q0w:B 301 102 0.1053 0.0864 0.2549 0.75 4q0r:A, 4q10:A, 4q10:B
12 6tor:B 404 99 0.1336 0.0817 0.3333 0.77 6tor:A
13 5zme:A 638 47 0.0769 0.0298 0.4043 0.79 5zmf:A
14 4cv5:A 185 54 0.0729 0.0973 0.3333 2.0
15 2hma:A 364 143 0.1296 0.0879 0.2238 2.6
16 7nhn:d 204 27 0.0526 0.0637 0.4815 3.0 8uu4:c, 8uu5:c, 8uu6:c, 8uu7:c, 8uu8:c, 8uu9:c
17 1coy:A 501 106 0.1255 0.0619 0.2925 3.0 3cox:A
18 8qjz:A 239 28 0.0486 0.0502 0.4286 4.0 8qk9:A, 8s7f:A
19 5wly:A 220 29 0.0486 0.0545 0.4138 4.3
20 5htv:A 424 135 0.1498 0.0873 0.2741 4.4 5htx:A
21 4q0z:A 322 84 0.0850 0.0652 0.2500 5.0 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
22 4zpj:A 371 41 0.0688 0.0458 0.4146 5.8

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218