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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVGLGAFILGFLGAAGSTMGAASMALTVQARLLLSGIVQQQNNLLRAPEAQQHMLQLTVWGIKQLQARVLAVERYLRDQQ
LLGIWGCSGKIICCTNVPWNDSWSNKTINEIWDNMTWMQWEKEIDNYTQHIYTLLEVSQIQQEKNEQE

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6x5b:B 149 148 1.0000 0.9933 1.0000 2.64e-107 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
2 6opn:B 124 141 0.8311 0.9919 0.8723 1.43e-83 6opn:E, 6opn:H
3 7n6u:B 595 143 0.8176 0.2034 0.8462 8.70e-80 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
4 7ucf:B 137 141 0.7635 0.8248 0.8014 1.25e-76 5t3x:B, 7t75:B, 7t9a:D, 7t9b:D, 7t9b:F
5 6pwu:A 615 141 0.7703 0.1854 0.8085 5.56e-75 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
6 6ohy:B 120 146 0.5541 0.6833 0.5616 1.71e-49 6ohy:E, 6ohy:F
7 1fav:A 78 51 0.3041 0.5769 0.8824 3.16e-25 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
8 2kp8:A 72 41 0.2568 0.5278 0.9268 6.21e-19 2kp8:B
9 2kp8:A 72 21 0.0946 0.1944 0.6667 1.3 2kp8:B
10 3gwo:A 53 29 0.1284 0.3585 0.6552 1.39e-05 5zcx:Q, 5zcx:W
11 1czq:A 45 19 0.1014 0.3333 0.7895 8.89e-04 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 2xto:A 224 60 0.1149 0.0759 0.2833 0.63 2xtm:A, 2xtm:B, 2xtn:A, 2xto:B
13 5yc0:G 31 32 0.1149 0.5484 0.5312 0.84
14 6kd5:A 131 51 0.1216 0.1374 0.3529 2.2
15 2efe:A 246 56 0.1216 0.0732 0.3214 3.5 2efe:C, 4g01:A
16 6fvz:A 500 34 0.0608 0.0180 0.2647 4.4 4a79:A, 4a79:B, 4a7a:A, 4a7a:B, 7b0v:A, 7b0v:B, 7b0z:A, 7b0z:B, 2bk3:A, 2bk3:B, 2bk4:A, 2bk4:B, 2bk5:A, 2bk5:B, 2byb:A, 2byb:B, 2c64:A, 2c64:B, 2c65:A, 2c65:B, 2c66:A, 2c66:B, 2c67:A, 2c67:B, 2c70:A, 2c70:B, 2c72:A, 2c72:B, 2c73:A, 2c73:B, 2c75:A, 2c75:B, 2c76:A, 2c76:B, 4crt:A, 4crt:B, 6fvz:B, 6fw0:A, 6fw0:B, 6fwc:A, 6fwc:B, 1gos:A, 1gos:B, 5mrl:A, 5mrl:B, 1oj9:A, 1oj9:B, 1oja:A, 1oja:B, 1ojc:A, 1ojc:B, 1ojd:A, 1ojd:B, 1ojd:C, 1ojd:D, 1ojd:E, 1ojd:F, 1ojd:G, 1ojd:H, 1ojd:I, 1ojd:L, 7p4f:A, 7p4f:B, 7p4h:A, 7p4h:B, 3po7:A, 3po7:B, 6rkb:A, 6rkb:B, 6rkp:A, 6rkp:B, 6rle:A, 6rle:B, 1s2q:A, 1s2q:B, 1s2y:A, 1s2y:B, 1s3b:A, 1s3b:B, 1s3e:A, 1s3e:B, 2v5z:A, 2v5z:B, 2v60:A, 2v60:B, 2v61:A, 2v61:B, 2vrl:A, 2vrl:B, 2vrm:A, 2vrm:B, 2vz2:A, 2vz2:B, 2xcg:A, 2xcg:B, 2xfn:A, 2xfn:B, 2xfo:A, 2xfo:B, 2xfp:A, 2xfp:B, 2xfq:A, 2xfq:B, 2xfu:A, 2xfu:B, 6yt2:A, 6yt2:B, 7zw3:AAA, 7zw3:BBB, 3zyx:A, 3zyx:B
17 1mum:A 289 21 0.0473 0.0242 0.3333 7.2 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
18 8q7h:A 1403 75 0.1149 0.0121 0.2267 7.2
19 6o3v:B 831 31 0.0608 0.0108 0.2903 9.2 6o3v:A, 6o3v:C, 6o6b:A, 6o6b:B, 6o6b:C, 6o6b:D
20 8xrt:F 751 64 0.1081 0.0213 0.2500 9.5 8xrt:E, 8xrt:A, 8xrt:B, 8xrt:C, 8xrt:D, 8xru:A, 8xru:B, 8xrv:A, 8xrv:B, 8xrv:C, 8xrv:F, 8xrv:D, 8xrv:E, 8xrx:A, 8xrx:D, 8xrx:F, 8xrx:B, 8xrx:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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