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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRPIKILTRLTIIV
SDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIK
DSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGI
ISTVKKP

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ahr:J 247 247 1.0000 1.0000 1.0000 0.0 6ahr:I, 6ahu:I, 6ahu:J
2 6agb:J 293 229 0.2672 0.2253 0.2882 1.68e-23 6agb:I, 6ah3:I, 6ah3:J, 7c79:I, 7c79:J, 7c7a:I, 7c7a:J, 6w6v:I, 6w6v:J
3 7cv9:C 351 53 0.0648 0.0456 0.3019 0.50 7cv8:A, 7dpe:A
4 8h6s:A 306 69 0.0769 0.0621 0.2754 0.54 5czc:A, 5czd:A, 7f2r:A, 7f2r:C, 8h6s:B
5 5ne1:B 270 43 0.0607 0.0556 0.3488 2.4 5ne2:A, 5ne2:B, 5ne3:A, 5ne3:B, 6qw7:A, 6qw7:B
6 7mq8:LR 773 55 0.0648 0.0207 0.2909 3.4 7mq9:LR, 7mqa:LR
7 7qix:P 237 54 0.0810 0.0844 0.3704 3.6 8auv:k, 8b2l:k1, 7qiz:FA, 4v7e:BG
8 5h9d:A 318 57 0.0729 0.0566 0.3158 4.3 5h9d:B
9 3zrq:A 382 39 0.0486 0.0314 0.3077 5.2 3zrp:A, 3zrp:B, 3zrq:B, 3zrr:A, 3zrr:B
10 7cv9:A 356 53 0.0648 0.0449 0.3019 7.2 7cv6:B, 7cv7:A, 7cv7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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