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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVEKLPEDFCANPDVAWTFPKVFYTSSQVFEHEKEAIFAKSWICVAHGSELAQPNDYITRKVIGENIVIIRGKDSVLRAF
YNVCPHRGHELLSGSGKAKNVITCPYHAWTFKLDGSLALARNCDHVESFDKENSSMVPLKVEEYAGFVFINMDENATCVE
DQLPGFAERLNQACGVIKDLKLAARFVTETPANWKVIVDNYMECYHCGPAHPGFADSVQVDKYWHTTHQNWTLQYGFARS
TDPEFHGFWTWPCTMFNVPPGSNFMTVIYEFPVDAETTLQHYDIYFTNEELTQDQKDLIEWYRNVFRPEDLNLVESVQRG
LKSRGYRGQGRIMTDKQRSGISEHGIAYFQHLVAQYHQ

The query sequence (length=358) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y9c:A 365 365 0.9972 0.9781 0.9781 0.0 6y8s:A, 6y9d:A, 6y9d:B, 6y9d:C, 6y9d:D, 6y9d:E, 6y9d:F, 6y9d:G, 6y9d:H, 6y9d:I, 6y9d:J, 6y9d:K, 6y9d:L, 6zgp:A, 6zgp:B, 6zgp:C, 6zgp:D, 6zgp:E, 6zgp:F, 6zgp:G, 6zgp:H, 6zgp:I, 6zgp:J, 6zgp:K, 6zgp:L
2 6y8j:A 343 357 0.9581 1.0000 0.9608 0.0
3 3n0q:A 402 219 0.1955 0.1741 0.3196 9.18e-34
4 4qur:A 415 211 0.1872 0.1614 0.3175 2.99e-29 5hl4:A, 4qup:A, 4quq:A, 3vca:A, 3vcp:A
5 7yls:B 436 215 0.1872 0.1537 0.3116 2.18e-24 8h2t:B, 8h2t:D, 8h2t:G
6 2gbw:A 449 199 0.1872 0.1492 0.3367 6.41e-24 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
7 2ckf:E 433 198 0.1816 0.1501 0.3283 1.09e-22 2ckf:C
8 3en1:A 424 196 0.1564 0.1321 0.2857 2.11e-22 3eqq:A
9 1eg9:A 447 198 0.1732 0.1387 0.3131 1.06e-21 4hjl:A, 4hkv:A, 2hmj:A, 2hmk:A, 2hml:A, 2hmm:A, 2hmn:A, 2hmo:A, 4hm0:A, 4hm1:A, 4hm2:A, 4hm3:A, 4hm4:A, 4hm5:A, 4hm6:A, 4hm7:A, 4hm8:A, 1ndo:A, 1ndo:C, 1ndo:E, 1o7g:A, 1o7h:A, 1o7m:A, 1o7n:A, 1o7p:A, 1o7w:A, 1uuv:A, 1uuw:A
10 2b1x:A 441 205 0.1592 0.1293 0.2780 1.76e-21 2b1x:C, 2b1x:E, 2b24:A, 2b24:C, 2b24:E
11 3gzx:A 440 199 0.1508 0.1227 0.2714 3.12e-21 3gzy:A
12 5xbp:A 444 207 0.1620 0.1306 0.2802 1.41e-19 5xbp:D, 5xbp:G
13 1uli:C 425 218 0.1536 0.1294 0.2523 1.48e-19 1uli:A, 1uli:E, 1ulj:A, 1ulj:C, 1ulj:E
14 1wql:A 436 200 0.1620 0.1330 0.2900 3.05e-19
15 2bmo:A 437 207 0.1648 0.1350 0.2850 9.98e-19 2bmq:A, 2bmr:A
16 7c8z:A 383 213 0.1732 0.1619 0.2911 5.12e-18 7c8z:C, 7c8z:E, 7c8z:G
17 5aeu:A 433 194 0.1425 0.1178 0.2629 8.40e-18 5aeu:C, 5aeu:E, 5aeu:G, 5aew:A, 5aew:C, 5aew:E, 5aew:G, 5aew:I, 5aew:K, 5aew:M, 5aew:O, 5aew:Q, 5aew:S, 5aew:U, 5aew:W, 2xr8:A, 2xr8:C, 2xr8:E, 2xr8:G, 2xr8:I, 2xr8:K, 2xr8:M, 2xr8:O, 2xr8:Q, 2xr8:S, 2xr8:U, 2xr8:W, 2xrx:A, 2xrx:C, 2xrx:E, 2xrx:G, 2xrx:I, 2xrx:K, 2xrx:M, 2xrx:O, 2xrx:Q, 2xrx:S, 2xrx:U, 2xrx:W, 2xsh:A, 2xsh:C, 2xsh:E, 2xsh:G, 2xsh:I, 2xsh:K, 2xso:A, 2xso:C, 2xso:E, 2xso:G, 2xso:I, 2xso:K, 2xso:M, 2xso:O, 2xso:Q, 2xso:S, 2xso:U, 2xso:W, 2yfi:A, 2yfi:C, 2yfi:E, 2yfi:G, 2yfi:I, 2yfi:K, 2yfj:A, 2yfj:C, 2yfj:E, 2yfj:G, 2yfj:I, 2yfj:K, 2yfl:A, 2yfl:C, 2yfl:E, 2yfl:G, 2yfl:I, 2yfl:K
18 7q05:E 409 202 0.1620 0.1418 0.2871 4.50e-16 7q04:D, 7q04:E, 7q04:F, 7q05:D, 7q05:F, 7q06:D, 7q06:E, 7q06:F, 7vju:A, 7vju:C, 7vju:E
19 3gcf:A 367 172 0.1257 0.1226 0.2616 1.98e-10 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O
20 7v28:B 425 169 0.1089 0.0918 0.2308 8.13e-08 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
21 6icn:A 344 177 0.1229 0.1279 0.2486 2.43e-07 6ick:A, 6ick:B, 6ick:C, 6icm:A, 6icm:B, 6icm:C, 6icn:B, 6icn:C, 6ico:A, 6ico:B, 6ico:C, 6icp:A, 6icp:B, 6icp:C, 6icq:A, 6icq:B, 6icq:C
22 3gkq:A 374 175 0.1285 0.1230 0.2629 6.12e-07 3gkq:B, 3gkq:C, 3gkq:D, 3gkq:E, 3gkq:F
23 2de6:B 390 171 0.1173 0.1077 0.2456 7.99e-07 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
24 7qwt:A 352 174 0.1173 0.1193 0.2414 2.27e-06 7qwt:B, 7qwt:C, 7qwt:D, 7qwt:E, 7qwt:F, 7qwt:G, 7qwt:H, 7qwt:I
25 6wn3:B 328 83 0.0726 0.0793 0.3133 4.84e-06 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
26 6icl:A 338 203 0.1397 0.1479 0.2463 5.70e-06
27 7sze:B 329 83 0.0726 0.0790 0.3133 1.51e-05 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
28 7fhr:A 437 115 0.0782 0.0641 0.2435 4.37e-05
29 3gob:A 342 182 0.1173 0.1228 0.2308 7.11e-05 3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B
30 6vsh:C 320 163 0.1061 0.1187 0.2331 5.37e-04 3gke:C, 3gl0:C, 3gl2:C
31 1sjg:A 112 53 0.0531 0.1696 0.3585 0.004 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
32 2zyl:A 359 88 0.0670 0.0669 0.2727 0.008 4qck:A
33 4qdf:B 357 80 0.0559 0.0560 0.2500 0.017
34 4qdc:A 369 78 0.0559 0.0542 0.2564 0.19 4qdd:A, 4qdf:A
35 8jng:A 147 80 0.0615 0.1497 0.2750 0.29
36 1z01:A 427 155 0.0978 0.0820 0.2258 0.78 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
37 5aj4:Bb 354 72 0.0615 0.0621 0.3056 0.98 6gaw:Bb, 6gb2:Bb, 7nqh:Bb, 7nql:Bb, 7nsh:Bb, 7nsi:Bb, 7nsj:Bb, 8oin:Bn, 8oiq:Bn, 6ydp:Bb, 6ydw:Bb
38 8uru:A 363 84 0.0670 0.0661 0.2857 1.1 8urq:A
39 2i7f:A 102 42 0.0363 0.1275 0.3095 2.0 2i7f:B
40 7qep:L4 329 49 0.0559 0.0608 0.4082 2.1
41 4v2k:A 235 29 0.0307 0.0468 0.3793 2.5 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
42 6wgm:A 304 70 0.0559 0.0658 0.2857 4.2
43 6hiy:DA 1426 31 0.0335 0.0084 0.3871 4.8
44 3n71:A 468 77 0.0615 0.0470 0.2857 4.8
45 6hiv:DA 1557 31 0.0335 0.0077 0.3871 4.9 6hiw:DA, 7pub:DA
46 7ux9:P 468 48 0.0391 0.0299 0.2917 7.8
47 8kcc:K 508 48 0.0391 0.0276 0.2917 9.1 8j90:K, 8kcb:K, 8wh5:K, 8wh8:K, 8wh9:K, 8wha:K, 8wha:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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