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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVEIPAGDHLWKSAPRPSGSTYMGGFKAPRLGRIRLAFIGVGGRGFSHLAQMCVMDGVEIVGICDLKEELTKRGVDRVLS
RMGKSPLGYSGGDMEYLTMLKELKPDAVIISTDWSSHARIACDSMKHGAHAFVEVPLAVSLEELWSLVDTSEATRKHCMM
MENVNYGRDELMFLNMVRQGVIGDLLHGEAAYIHCLVTQLGDTRGEGAWRPEYHTRINGNLYPTHGLGPVAQYMNLERGE
DRFCRVAAFASPALGRNAYAKKHLPADHRWNNTPFICGDMNTAVVKTQLGRTILVQLDETSPRPYSRANLIQGTEGTLAG
FPTRVAGEKLGNGNYHEWIEGREKLAAIYEKYDHPLWKRIGELATKMGGHGGMDFVMLSRIVECLRNGEPMDQNVYEGAS
WSSLLPLTARSIAQGGMPVEFPDFTRGDWKTTMPLAVVS

The query sequence (length=439) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6t2b:B 439 439 1.0000 1.0000 1.0000 0.0 6t2b:A, 6t2b:C, 6t2b:D
2 2ixa:A 426 422 0.3508 0.3615 0.3649 1.00e-76 2ixb:A
3 3e18:A 348 160 0.1002 0.1264 0.2750 8.45e-15 3e18:B
4 9azo:A 315 121 0.0866 0.1206 0.3140 5.90e-08 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
5 8tdf:A 452 113 0.0820 0.0796 0.3186 3.28e-06 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A
6 3ec7:A 336 159 0.0774 0.1012 0.2138 3.65e-06 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
7 3m2t:A 342 162 0.0934 0.1199 0.2531 6.92e-06 3m2t:B
8 3q2i:A 345 132 0.0706 0.0899 0.2348 7.97e-06
9 1h6d:A 383 87 0.0569 0.0653 0.2874 3.45e-05 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
10 7xre:C 363 133 0.0729 0.0882 0.2406 0.001 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F
11 4min:A 339 129 0.0638 0.0826 0.2171 0.002 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
12 6jw7:A 342 133 0.0683 0.0877 0.2256 0.003 6jw6:A, 6jw6:B, 6jw7:B, 6jw8:A, 6jw8:B
13 6ktk:C 368 108 0.0524 0.0625 0.2130 0.015 6ktk:A, 6ktk:B, 6ktk:D, 6ktl:A, 6ktl:B, 6ktl:C, 6ktl:D, 5ya8:A, 5ya8:B, 5ya8:C, 5ya8:D, 5yap:A, 5yap:B, 5yap:C, 5yap:D, 5yaq:A, 5yaq:B, 5yaq:C, 5yaq:D
14 4l8v:A 337 117 0.0615 0.0801 0.2308 0.020 4l8v:B, 4l8v:C, 4l8v:D, 3nt2:A, 3nt2:B, 3nt4:A, 3nt4:B, 3nt5:A, 3nt5:B, 3ntq:A, 3ntq:B, 3ntr:A, 3ntr:B
15 6o15:A 355 81 0.0478 0.0592 0.2593 0.040 6o15:B
16 5aj4:Bb 354 82 0.0569 0.0706 0.3049 0.068 6gaw:Bb, 6gb2:Bb, 7nqh:Bb, 7nql:Bb, 7nsh:Bb, 7nsi:Bb, 7nsj:Bb, 8oin:Bn, 8oiq:Bn, 6ydp:Bb, 6ydw:Bb
17 3cea:A 342 112 0.0661 0.0848 0.2589 0.071 3cea:B, 3cea:C, 3cea:D
18 6z3c:AAA 379 94 0.0524 0.0607 0.2447 0.074 6z3b:A, 6z3b:B, 6z3c:BBB
19 1lc3:A 292 97 0.0638 0.0959 0.2887 0.091 1lc0:A
20 3dzd:A 368 50 0.0342 0.0408 0.3000 0.13 3dzd:B
21 2h63:D 285 91 0.0592 0.0912 0.2857 0.15 2h63:A, 2h63:B, 2h63:C
22 5uhw:A 342 164 0.0843 0.1082 0.2256 0.22 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
23 8e5g:A 220 124 0.0774 0.1545 0.2742 0.27
24 7x2y:A 342 153 0.0843 0.1082 0.2418 0.30 7x1x:A, 7x1x:B, 7x2y:B
25 1wao:1 471 62 0.0501 0.0467 0.3548 0.32 2bug:A, 8gae:E, 8gft:E, 3h60:A, 3h60:B, 3h61:A, 3h61:D, 3h62:C, 3h62:B, 3h63:A, 3h63:C, 3h64:A, 3h64:D, 3h66:A, 3h66:B, 3h67:A, 3h67:D, 3h68:A, 3h68:D, 3h69:A, 3h69:D, 5hpe:A, 4ja7:A, 4ja9:A, 1s95:A, 1s95:B, 5ui1:A, 5ui1:B, 5ui1:C, 5ui1:D, 1wao:2, 1wao:3, 1wao:4, 5wg8:A, 4zvz:A, 4zvz:B, 4zvz:C, 4zvz:D, 4zx2:A
26 4i45:A 129 70 0.0569 0.1938 0.3571 0.37
27 3q2k:C 347 112 0.0615 0.0778 0.2411 0.39 3q2k:A, 3q2k:B, 3q2k:D, 3q2k:F, 3q2k:G, 3q2k:H, 3q2k:I, 3q2k:J, 3q2k:M, 3q2k:N, 3q2k:O
28 3q2k:K 322 112 0.0615 0.0839 0.2411 0.43 3q2k:E, 3q2k:L, 3q2k:P
29 7bvj:A 313 47 0.0364 0.0511 0.3404 0.66 7bvj:B, 7bvj:C, 7bvj:D, 7bvk:A, 7bvk:B
30 6g1h:A 342 88 0.0547 0.0702 0.2727 0.83 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
31 4e2o:A 445 57 0.0364 0.0360 0.2807 1.0
32 7d5m:A 389 105 0.0638 0.0720 0.2667 1.1 7d5n:A, 7d5n:B
33 6zhh:A 883 116 0.0729 0.0362 0.2759 1.5 6zhf:A, 6zhg:A, 6zhh:B, 6zhh:C, 6zhh:D, 6zhh:E, 6zhh:F, 6zhh:G, 6zhh:H
34 4n54:A 340 107 0.0569 0.0735 0.2336 1.6 4n54:B, 4n54:C, 4n54:D
35 6a3j:C 378 110 0.0638 0.0741 0.2545 2.0 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D
36 2v2f:F 366 81 0.0478 0.0574 0.2593 2.3
37 3rc1:A 325 165 0.0843 0.1138 0.2242 3.3 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
38 2zc0:A 405 82 0.0592 0.0642 0.3171 3.3 2zc0:B, 2zc0:C, 2zc0:D
39 1zh8:A 325 61 0.0364 0.0492 0.2623 3.7 1zh8:B
40 2glx:A 332 43 0.0342 0.0452 0.3488 3.7 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
41 5a03:C 336 106 0.0501 0.0655 0.2075 6.0 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
42 7nvn:Z 529 52 0.0342 0.0284 0.2885 6.0 8i1u:F, 8i1u:N, 8i9u:F, 8i9u:N, 7nvl:Z, 7nvl:z, 7nvm:Z, 7nvm:z, 7nvn:z, 8sfe:z, 8sfe:Z, 8sff:Z, 8sff:z, 8sg8:Z, 8sg8:z, 8sg9:Z, 8sg9:z, 8sgc:Z, 8sgc:z, 8sgl:Z, 8sgl:z, 8sgq:z, 8sgq:Z, 8sh9:Z, 8sh9:z, 8sha:Z, 8sha:z, 8shd:Z, 8shd:z, 8she:Z, 8she:z, 8shf:Z, 8shf:z, 8shg:Z, 8shg:z, 8shl:Z, 8shl:z, 8shn:Z, 8shn:z, 8sho:Z, 8sho:z, 8shp:Z, 8shp:z, 8shq:Z, 8shq:z, 8sht:Z, 8sht:z, 7trg:I, 7ttn:I, 7ttt:I, 7tub:I, 7wu7:F, 7wu7:N, 7wz3:Z, 7wz3:z, 7x0s:K, 7x0s:z, 7x0v:K, 7x0v:z, 7x3j:Z, 7x3j:z, 7x3u:Z, 7x3u:z
43 3dty:A 374 100 0.0615 0.0722 0.2700 6.8 3dty:E
44 1gqy:B 469 35 0.0296 0.0277 0.3714 6.9 1gqy:A, 1p31:A, 1p31:B, 1p3d:A, 1p3d:B
45 4nhe:B 326 57 0.0364 0.0491 0.2807 7.8 4nhe:A, 4nhe:C
46 5b3u:B 317 42 0.0296 0.0410 0.3095 8.2 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
47 6rm3:SA0 197 21 0.0228 0.0508 0.4762 8.7
48 5hh3:C 393 47 0.0364 0.0407 0.3404 9.6 5hh3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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