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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTG
RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGH
LNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEED
KMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVFK

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6msb:c 287 287 1.0000 1.0000 1.0000 0.0 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
2 3jck:G 257 282 0.6272 0.7004 0.6383 9.79e-124 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B
3 4f7o:A 235 201 0.2718 0.3319 0.3881 6.13e-38 4f7o:B
4 6r6h:E 310 202 0.2753 0.2548 0.3911 1.71e-37 4d10:E, 4d10:M, 4d18:E, 4d18:M, 8h38:E, 8h3a:E, 8h3f:E, 5jog:A, 5joh:A, 5m5q:A, 6r7i:E, 4wsn:E, 4wsn:M, 4wsn:U, 4wsn:c, 4wsn:k, 4wsn:s
5 6fju:A 176 125 0.1603 0.2614 0.3680 8.38e-20 6fju:B, 6fnn:A, 6fnn:B, 6fno:A, 6fno:B
6 6gvw:B 262 158 0.1568 0.1718 0.2848 3.06e-13 5cw6:A, 6gvw:G, 6h3c:B, 6h3c:G, 6r8f:A, 6r8f:C
7 6w2s:5 324 140 0.1463 0.1296 0.3000 1.20e-10 8pj5:8, 8rg0:8
8 2znr:A 178 119 0.1080 0.1742 0.2605 2.77e-07 7l97:A, 2znv:A, 2znv:D
9 5cw3:A 248 106 0.1045 0.1210 0.2830 1.55e-06 5cw3:C, 5cw4:A
10 4msj:A 190 58 0.0662 0.1000 0.3276 2.05e-06 4jxe:A, 4jxe:B, 4k1r:A, 4k1r:C, 7lm3:A, 7lm3:B, 4ms7:A, 4ms7:B, 4msd:A, 4msd:B, 4msj:B, 4msj:C, 4msm:A, 4msm:C, 4msq:A, 4msq:C, 4nql:A, 4pqt:A, 4zd4:A, 4zd4:B, 4zd5:A, 4zd5:B, 4zfr:A, 4zft:A, 4zft:C
11 3rzv:A 179 41 0.0523 0.0838 0.3659 0.001 3rzu:A, 3rzu:B, 3rzu:C, 3rzu:D, 3rzu:E, 3rzu:F, 3rzu:G
12 4v4o:F 529 135 0.1080 0.0586 0.2296 0.10 4v4o:A, 4v4o:B, 4v4o:C, 4v4o:D, 4v4o:E, 4v4o:G, 4v4o:a, 4v4o:b, 4v4o:c, 4v4o:d, 4v4o:e, 4v4o:f, 4v4o:g
13 6b6w:B 628 25 0.0453 0.0207 0.5200 0.95 6b6v:A, 6b6v:B, 6b6w:A, 6b6x:A, 6b6x:B, 6b6y:A, 6b6y:B, 6dc2:A, 6dc2:B, 6dc2:C, 6dc2:D, 6onc:A, 6onc:B, 6onc:C, 6onc:D, 6ond:A, 6ond:B, 6ond:C, 6ond:D, 6ons:A, 7tsj:A, 6vwy:A, 6vwy:B, 6vwz:A, 6vwz:B, 6vx0:A, 6vx0:B, 6vx1:A, 6vx1:B
14 6aa8:E 281 52 0.0523 0.0534 0.2885 4.6 6aa8:F
15 1y56:A 484 74 0.0697 0.0413 0.2703 6.8
16 5ymr:B 798 67 0.0732 0.0263 0.3134 7.2 5ymr:D, 5ymr:C, 5ymr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218