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BioLiP
>protein
AVCPTGLFSNPLCCATNVLDLIGVDCKTPTIAVDTGAIFQAHCASKGSKPLCCVAPVADQALLCQKAIGT

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2b97:A 70 70 1.0000 1.0000 1.0000 3.39e-45 3qqt:A, 3qqt:B, 1r2m:A
2 2fz6:A 72 67 0.6286 0.6111 0.6567 1.05e-24 2gvm:B
3 3viu:A 703 26 0.1429 0.0142 0.3846 5.7
4 4i5q:A 220 39 0.2000 0.0636 0.3590 9.8
5 1sdd:A 268 23 0.1286 0.0336 0.3913 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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