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BioLiP
>protein
AVCGSVWGQNDLAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSIMYTGGGCCDCGDTTAWKREGFCSRHK

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wul:A 70 70 1.0000 1.0000 1.0000 8.67e-49 7wuk:A, 7wum:A, 7wun:A
2 7y70:A 77 64 0.7714 0.7013 0.8438 2.04e-37 6lhn:A, 7xwd:A, 7xwe:A, 7xwe:B, 7xwf:A, 7xwg:A, 7xwg:B, 7y6w:A, 7y6x:A, 7y6x:B, 7y6x:D, 7y6x:E, 7y6x:F, 7y6x:G, 7y6x:H, 7y6x:C, 7y6y:A, 7y6y:B, 7y6y:C, 7y6y:D, 7y6z:A
3 3ny1:A 73 70 0.5000 0.4795 0.5000 5.03e-19 3ny1:B, 5tdc:A, 5tdc:C
4 7mex:A 1737 68 0.3571 0.0144 0.3676 2.13e-10 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
5 3ny2:D 73 71 0.3857 0.3699 0.3803 5.64e-10 3ny2:A, 3ny2:B, 3ny2:C, 3ny2:E, 3ny2:F, 3ny2:G, 3ny2:H, 3ny3:A, 5tda:A, 5tdb:A, 5tdd:A, 5um3:A
6 7yrb:A 83 45 0.2571 0.2169 0.4000 0.30 5vmd:A, 5vmd:C, 5vmd:B, 5vmd:D
7 8j9q:A 73 47 0.2429 0.2329 0.3617 0.51 8j9q:B, 8j9q:C, 8j9r:A
8 6cw3:E 120 39 0.2000 0.1167 0.3590 1.8 6cw2:C
9 4abk:A 182 39 0.1857 0.0714 0.3333 3.6 5qht:A, 5qhu:A, 5qhv:A, 5qhw:A, 5qhx:A, 5qhy:A, 5qhz:A, 5qi0:A, 5qi1:A, 5qi2:A, 5qi3:A, 5qi4:A, 5qi5:A, 5qi6:A, 5qi7:A, 5qi8:A, 5qi9:A, 5qia:A
10 5zln:B 753 27 0.1429 0.0133 0.3704 3.8 3wpg:A, 3wph:A, 3wpi:A, 5zln:A
11 6cw3:G 92 32 0.1714 0.1304 0.3750 4.9
12 1r3n:A 438 28 0.1429 0.0228 0.3571 5.5 1r3n:B, 1r3n:C, 1r3n:D, 1r3n:E, 1r3n:F, 1r3n:G, 1r3n:H, 1r43:A, 1r43:B, 2v8d:A, 2v8d:B, 2v8g:A, 2v8g:B, 2v8g:C, 2v8g:D, 2v8h:A, 2v8h:B, 2v8h:C, 2v8h:D, 2v8v:A, 2v8v:B, 2v8v:C, 2v8v:D, 2vl1:A, 2vl1:B, 2vl1:C, 2vl1:D
13 4pxb:A 423 21 0.1143 0.0189 0.3810 7.5 4pxb:B, 4pxc:A, 4pxc:B, 4pxe:A, 4pxe:B
14 7qp3:A 391 32 0.1714 0.0307 0.3750 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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