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BioLiP
>protein
ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAY
PTSDVVIETHKEEELT

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gaq:B 98 96 1.0000 0.9796 1.0000 1.53e-66 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
2 1pfd:A 96 95 0.8229 0.8229 0.8316 2.57e-55
3 4zho:A 97 95 0.7917 0.7835 0.8000 6.48e-52 4zho:B
4 1a70:A 97 96 0.7500 0.7423 0.7500 5.46e-50
5 6yac:N 97 96 0.7708 0.7629 0.7708 1.13e-48 6yez:N
6 4zhp:A 98 96 0.7500 0.7347 0.7500 2.51e-48
7 5auk:A 96 95 0.7083 0.7083 0.7158 1.46e-46 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
8 6xtf:D 96 95 0.6667 0.6667 0.6737 1.99e-44 6xtf:C
9 1rfk:B 97 97 0.7396 0.7320 0.7320 7.15e-44 3p63:A, 3p63:B, 1rfk:A
10 1czp:A 98 97 0.7188 0.7041 0.7113 5.54e-43 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
11 1awd:A 94 93 0.6667 0.6809 0.6882 1.90e-42
12 3av8:A 97 96 0.6875 0.6804 0.6875 1.56e-41 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
13 7akt:A 107 93 0.6354 0.5701 0.6559 1.87e-41 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
14 1frr:A 95 93 0.6562 0.6632 0.6774 5.98e-41 1frr:B
15 5h57:A 97 96 0.6667 0.6598 0.6667 1.01e-40 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
16 6khi:1 98 96 0.6458 0.6327 0.6458 1.12e-39 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
17 7y5e:NN 99 97 0.6562 0.6364 0.6495 4.34e-39 7y5e:N2, 7y7a:N7, 7y7a:No
18 3b2g:A 98 96 0.6562 0.6429 0.6562 4.40e-39 3b2g:B
19 3ab5:A 97 95 0.6354 0.6289 0.6421 5.88e-39 3ab5:B, 3wcq:A
20 7s3d:X 97 96 0.6354 0.6289 0.6354 1.82e-38 7s3d:W, 7s3d:x
21 4fxc:A 98 97 0.6562 0.6429 0.6495 1.45e-37
22 1iue:A 98 95 0.5521 0.5408 0.5579 4.11e-35 1iue:B
23 4itk:A 104 93 0.5625 0.5192 0.5806 6.65e-35
24 6iri:A 107 95 0.5312 0.4766 0.5368 1.97e-31
25 1wri:A 93 93 0.5521 0.5699 0.5699 1.12e-30
26 8jc1:A 267 95 0.5938 0.2135 0.6000 9.91e-30 8jc1:B, 8jc1:C, 8jc1:D
27 6vjv:A 96 95 0.5000 0.5000 0.5053 3.34e-29 6vjv:B
28 4n58:A 266 95 0.5312 0.1917 0.5368 6.86e-27 4n58:B, 4n59:A, 4n59:B
29 1frd:A 98 94 0.5000 0.4898 0.5106 6.72e-22
30 1doi:A 128 81 0.3438 0.2578 0.4074 1.16e-12
31 1e0z:A 128 72 0.3125 0.2344 0.4167 4.83e-12 1e10:A
32 3zyy:X 628 92 0.2812 0.0430 0.2935 2.64e-08 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
33 1krh:A 337 74 0.2500 0.0712 0.3243 2.79e-08 1krh:B
34 5ogx:A 333 60 0.2083 0.0601 0.3333 1.38e-05
35 1jq4:A 98 89 0.2708 0.2653 0.2921 2.46e-05
36 2pia:A 321 51 0.1667 0.0498 0.3137 1.53e-04
37 7ylr:A 326 43 0.1771 0.0521 0.3953 0.002
38 7c3b:B 306 54 0.1875 0.0588 0.3333 0.003
39 7c3b:C 334 54 0.1875 0.0539 0.3333 0.004 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
40 5frt:E 105 53 0.1771 0.1619 0.3208 0.004 5ffi:E
41 5frt:A 119 53 0.1771 0.1429 0.3208 0.004 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
42 6icm:D 87 85 0.2292 0.2529 0.2588 0.005
43 6laa:A 753 45 0.1562 0.0199 0.3333 0.016 6gii:A, 6ldl:A
44 4wqm:A 326 62 0.1771 0.0521 0.2742 0.023
45 8iuf:1A 352 45 0.1562 0.0426 0.3333 0.094 8j9h:1A, 8j9i:1A, 8j9j:1A
46 1i7h:A 109 92 0.2604 0.2294 0.2717 0.10 1i7h:B, 1i7h:C
47 6kbh:A 765 78 0.1875 0.0235 0.2308 0.20
48 7q5y:A 626 41 0.1562 0.0240 0.3659 0.21 7q5y:G, 7q5y:M, 7q5y:S
49 8uuq:C 372 49 0.1771 0.0457 0.3469 1.4 9at8:F, 8uuq:G, 8uuq:E, 5yzc:B, 5yzd:C
50 8a5e:A 583 55 0.1562 0.0257 0.2727 2.0 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
51 6itd:A 328 81 0.2292 0.0671 0.2716 2.0 6k36:A, 6k37:A, 6k38:A
52 7d6v:B 239 41 0.1250 0.0502 0.2927 3.5 7d6x:B
53 3kl9:A 340 34 0.1250 0.0353 0.3529 4.6 3kl9:B, 3kl9:C, 3kl9:D, 3kl9:E, 3kl9:F, 3kl9:G, 3kl9:H, 3kl9:I, 3kl9:J, 3kl9:K, 3kl9:L
54 1nml:A 316 68 0.2083 0.0633 0.2941 6.0 1rz5:A, 1rz6:A
55 4aqt:A 356 38 0.1250 0.0337 0.3158 6.5 8dmk:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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