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BioLiP
>protein
ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYVLTCHAY
PTSDVVIETHKEEEIV

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1pfd:A 96 96 1.0000 1.0000 1.0000 1.71e-66
2 1gaq:B 98 95 0.8229 0.8061 0.8316 2.37e-55 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
3 4zho:A 97 96 0.8125 0.8041 0.8125 5.18e-54 4zho:B
4 6yac:N 97 95 0.7604 0.7526 0.7684 1.43e-50 6yez:N
5 1a70:A 97 96 0.7188 0.7113 0.7188 1.34e-49
6 5auk:A 96 95 0.7083 0.7083 0.7158 2.66e-49 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
7 4zhp:A 98 96 0.7396 0.7245 0.7396 3.22e-49
8 6xtf:D 96 95 0.6562 0.6562 0.6632 1.70e-44 6xtf:C
9 1rfk:B 97 97 0.6771 0.6701 0.6701 5.50e-42 3p63:A, 3p63:B, 1rfk:A
10 1awd:A 94 93 0.6458 0.6596 0.6667 6.84e-42
11 3av8:A 97 96 0.6667 0.6598 0.6667 2.85e-41 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
12 1czp:A 98 97 0.6562 0.6429 0.6495 5.61e-41 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
13 4fxc:A 98 97 0.6458 0.6327 0.6392 8.23e-41
14 7akt:A 107 93 0.6146 0.5514 0.6344 9.45e-41 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
15 7y5e:NN 99 97 0.6562 0.6364 0.6495 1.40e-40 7y5e:N2, 7y7a:N7, 7y7a:No
16 5h57:A 97 96 0.6250 0.6186 0.6250 1.25e-38 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
17 7s3d:X 97 96 0.6042 0.5979 0.6042 1.46e-38 7s3d:W, 7s3d:x
18 3ab5:A 97 95 0.5729 0.5670 0.5789 4.32e-38 3ab5:B, 3wcq:A
19 6khi:1 98 96 0.5938 0.5816 0.5938 9.07e-38 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
20 3b2g:A 98 76 0.5625 0.5510 0.7105 1.45e-37 3b2g:B
21 1frr:A 95 93 0.5938 0.6000 0.6129 6.04e-37 1frr:B
22 1iue:A 98 95 0.5312 0.5204 0.5368 2.96e-36 1iue:B
23 4itk:A 104 93 0.5208 0.4808 0.5376 1.66e-33
24 8jc1:A 267 96 0.5938 0.2135 0.5938 1.80e-33 8jc1:B, 8jc1:C, 8jc1:D
25 1wri:A 93 93 0.5521 0.5699 0.5699 4.36e-33
26 6iri:A 107 96 0.5000 0.4486 0.5000 8.50e-33
27 6vjv:A 96 95 0.4792 0.4792 0.4842 5.14e-30 6vjv:B
28 4n58:A 266 96 0.5104 0.1842 0.5104 1.29e-26 4n58:B, 4n59:A, 4n59:B
29 1frd:A 98 94 0.5104 0.5000 0.5213 1.02e-22
30 1doi:A 128 65 0.3125 0.2344 0.4615 3.54e-13
31 1e0z:A 128 65 0.3125 0.2344 0.4615 1.47e-12 1e10:A
32 1krh:A 337 100 0.3438 0.0979 0.3300 1.89e-10 1krh:B
33 3zyy:X 628 83 0.2917 0.0446 0.3373 3.41e-08 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
34 1jq4:A 98 89 0.3125 0.3061 0.3371 3.53e-08
35 5ogx:A 333 74 0.2188 0.0631 0.2838 1.78e-06
36 2pia:A 321 45 0.1562 0.0467 0.3333 1.49e-04
37 7c3b:B 306 97 0.2500 0.0784 0.2474 4.07e-04
38 7c3b:C 334 97 0.2500 0.0719 0.2474 5.64e-04 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
39 4wqm:A 326 81 0.2083 0.0613 0.2469 8.15e-04
40 7ylr:A 326 54 0.1771 0.0521 0.3148 0.002
41 5frt:E 105 95 0.2292 0.2095 0.2316 0.003 5ffi:E
42 5frt:A 119 68 0.1667 0.1345 0.2353 0.004 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
43 6icm:D 87 82 0.1979 0.2184 0.2317 0.019
44 1i7h:A 109 92 0.2604 0.2294 0.2717 0.039 1i7h:B, 1i7h:C
45 6kbh:A 765 78 0.1875 0.0235 0.2308 0.042
46 7q5y:A 626 41 0.1771 0.0272 0.4146 0.22 7q5y:G, 7q5y:M, 7q5y:S
47 7d6v:B 239 41 0.1250 0.0502 0.2927 0.65 7d6x:B
48 8iuf:1A 352 45 0.1667 0.0455 0.3556 1.1 8j9h:1A, 8j9i:1A, 8j9j:1A
49 6cds:A 325 18 0.0833 0.0246 0.4444 3.1 6cds:B, 7lwh:A, 4p7i:A, 4p7i:B, 3wa0:A, 3wa0:B, 3wa0:C, 3wa0:E, 3wa0:F, 4zri:A, 4zri:B, 4zrk:A, 4zrk:C, 4zrk:B, 4zrk:D
50 3fcc:A 500 31 0.1042 0.0200 0.3226 3.3 3dhv:A, 3fce:A
51 1w52:X 448 42 0.1354 0.0290 0.3095 5.9
52 4xdd:A 582 33 0.1146 0.0189 0.3333 6.8 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
53 3n91:A 315 66 0.2083 0.0635 0.3030 7.3
54 2i74:A 180 47 0.1667 0.0889 0.3404 7.3 2i74:B
55 3kl9:A 340 34 0.1146 0.0324 0.3235 7.6 3kl9:B, 3kl9:C, 3kl9:D, 3kl9:E, 3kl9:F, 3kl9:G, 3kl9:H, 3kl9:I, 3kl9:J, 3kl9:K, 3kl9:L
56 8tjc:B 336 15 0.1042 0.0298 0.6667 8.0 7jhi:A, 7jhi:C, 7jhl:A, 7jhl:B, 7jhm:A, 7jhm:B, 7jhn:A, 7jho:A, 7jho:B, 8sz3:A, 8sz3:B, 8tic:A, 8tic:B, 8tic:C, 8tic:D, 8tjc:A, 8tjc:C, 8tjc:D, 6wmm:A, 6wmm:B, 6wmn:A, 6wmn:B, 6wmn:C, 6wmn:D, 6wmo:A, 6wmo:B
57 6jon:A 280 48 0.1354 0.0464 0.2708 8.9 6jop:A, 6joq:A, 6k9a:A, 7rr3:A, 7rr4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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