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BioLiP
>protein
ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVA
YPRSDCKILTNQEEELY

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6khi:1 98 97 1.0000 0.9898 1.0000 2.49e-67 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
2 7s3d:X 97 97 0.7629 0.7629 0.7629 6.78e-50 7s3d:W, 7s3d:x
3 3b2g:A 98 97 0.7423 0.7347 0.7423 5.38e-49 3b2g:B
4 6xtf:D 96 97 0.7320 0.7396 0.7320 7.69e-48 6xtf:C
5 1rfk:B 97 97 0.7423 0.7423 0.7423 1.09e-47 3p63:A, 3p63:B, 1rfk:A
6 1czp:A 98 98 0.7423 0.7347 0.7347 1.65e-47 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
7 5auk:A 96 97 0.7113 0.7188 0.7113 4.36e-46 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
8 3av8:A 97 98 0.7423 0.7423 0.7347 4.49e-46 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
9 7y5e:NN 99 98 0.7320 0.7172 0.7245 6.34e-46 7y5e:N2, 7y7a:N7, 7y7a:No
10 4fxc:A 98 98 0.7216 0.7143 0.7143 2.65e-45
11 1awd:A 94 95 0.7320 0.7553 0.7474 2.68e-45
12 3ab5:A 97 96 0.7010 0.7010 0.7083 3.98e-45 3ab5:B, 3wcq:A
13 7akt:A 107 95 0.6804 0.6168 0.6947 1.40e-42 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
14 5h57:A 97 97 0.6495 0.6495 0.6495 2.33e-42 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
15 6yac:N 97 96 0.6701 0.6701 0.6771 3.20e-41 6yez:N
16 1gaq:B 98 96 0.6392 0.6327 0.6458 1.22e-39 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
17 1a70:A 97 96 0.6289 0.6289 0.6354 6.25e-39
18 4itk:A 104 94 0.6289 0.5865 0.6489 1.15e-38
19 4zho:A 97 96 0.6082 0.6082 0.6146 1.35e-38 4zho:B
20 6vjv:A 96 95 0.5876 0.5938 0.6000 2.61e-38 6vjv:B
21 1pfd:A 96 96 0.5876 0.5938 0.5938 1.17e-37
22 4zhp:A 98 96 0.6289 0.6224 0.6354 1.27e-37
23 1frr:A 95 95 0.6186 0.6316 0.6316 2.82e-37 1frr:B
24 1iue:A 98 97 0.5670 0.5612 0.5670 5.33e-36 1iue:B
25 6iri:A 107 96 0.5670 0.5140 0.5729 1.38e-34
26 1wri:A 93 94 0.5670 0.5914 0.5851 7.24e-32
27 4n58:A 266 96 0.5567 0.2030 0.5625 4.02e-28 4n58:B, 4n59:A, 4n59:B
28 1frd:A 98 94 0.5670 0.5612 0.5851 1.57e-27
29 8jc1:A 267 96 0.5361 0.1948 0.5417 8.34e-27 8jc1:B, 8jc1:C, 8jc1:D
30 1e0z:A 128 78 0.4124 0.3125 0.5128 4.61e-20 1e10:A
31 1doi:A 128 78 0.4021 0.3047 0.5000 1.02e-19
32 2pia:A 321 78 0.2784 0.0841 0.3462 1.65e-08
33 1jq4:A 98 88 0.3093 0.3061 0.3409 1.95e-08
34 1krh:A 337 89 0.2680 0.0772 0.2921 4.10e-08 1krh:B
35 7ylr:A 326 62 0.2165 0.0644 0.3387 5.06e-07
36 6laa:A 753 77 0.2165 0.0279 0.2727 8.33e-07 6gii:A, 6ldl:A
37 3zyy:X 628 87 0.2784 0.0430 0.3103 1.69e-06 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
38 5ogx:A 333 74 0.2268 0.0661 0.2973 6.88e-06
39 2mjd:A 115 46 0.2165 0.1826 0.4565 8.06e-06 2mje:A
40 4wqm:A 326 69 0.2474 0.0736 0.3478 1.38e-05
41 2wlb:A 103 46 0.2062 0.1942 0.4348 3.93e-04 2wlb:B
42 7c3b:B 306 70 0.2577 0.0817 0.3571 4.12e-04
43 6kbh:A 765 68 0.1856 0.0235 0.2647 8.21e-04
44 5frt:E 105 53 0.1959 0.1810 0.3585 0.001 5ffi:E
45 5frt:A 119 53 0.1959 0.1597 0.3585 0.001 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
46 7c3b:C 334 72 0.2371 0.0689 0.3194 0.002 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
47 1i7h:A 109 68 0.2165 0.1927 0.3088 0.011 1i7h:B, 1i7h:C
48 6icm:D 87 47 0.1443 0.1609 0.2979 0.13
49 7q5y:A 626 39 0.1443 0.0224 0.3590 0.27 7q5y:G, 7q5y:M, 7q5y:S
50 5uj5:A 132 25 0.1340 0.0985 0.5200 0.79
51 2y5c:A 107 58 0.1753 0.1589 0.2931 1.5 2y5c:B
52 7d6v:B 239 65 0.1856 0.0753 0.2769 2.0 7d6x:B
53 4hea:3 756 48 0.1340 0.0172 0.2708 2.1 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
54 7es1:A 408 43 0.1959 0.0466 0.4419 2.2 7erx:A, 7es0:A, 7es2:A
55 3ejx:D 301 29 0.1031 0.0332 0.3448 4.9 3ejx:A, 3ejx:B, 3ejx:C, 3ejx:E, 3ejx:F, 3ekm:A, 3ekm:B, 3ekm:C, 3ekm:D, 3ekm:E, 3ekm:F
56 2bs2:B 239 23 0.1031 0.0418 0.4348 5.0 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
57 6c4a:A 428 29 0.1031 0.0234 0.3448 8.1 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
58 8a5e:A 583 36 0.1340 0.0223 0.3611 9.2 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
59 6ncx:B 559 34 0.1134 0.0197 0.3235 9.9 6ncx:D, 6ncx:A, 6ncx:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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