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BioLiP
>protein
ATVVSGQKQDRQGGERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSL

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mqv:A 56 55 1.0000 0.9821 1.0000 3.87e-35 1a6b:B, 2ms0:A, 2ms0:C, 2ms1:A, 1u6p:A, 1wwd:A, 1wwe:A, 1wwf:A, 1wwg:A
2 8opp:A 670 21 0.1818 0.0149 0.4762 0.036
3 8opt:A 783 31 0.2182 0.0153 0.3871 0.051 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
4 7c4c:A 332 29 0.2000 0.0331 0.3793 0.62 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
5 6exn:c 204 19 0.2000 0.0539 0.5789 0.67
6 6bk8:O 229 19 0.2000 0.0480 0.5789 0.71
7 7b9v:c 37 19 0.2000 0.2973 0.5789 0.77
8 5w0n:A 379 17 0.1455 0.0211 0.4706 1.5 5w0m:A, 5w0m:C, 5w0n:B
9 5w0b:A 334 15 0.1455 0.0240 0.5333 1.8
10 5yzg:y 112 35 0.2182 0.1071 0.3429 1.9 8i0w:z
11 1p9b:A 424 26 0.1818 0.0236 0.3846 2.8
12 7z94:A 413 40 0.2182 0.0291 0.3000 3.1 7z4x:A, 7z97:A, 7z98:A, 7z99:A, 7zca:A
13 2ihx:A 50 28 0.2000 0.2200 0.3929 4.6
14 2a3w:A 204 18 0.1818 0.0490 0.5556 5.8 2a3w:J, 2a3w:B, 2a3w:I, 2a3w:C, 2a3w:H, 2a3w:D, 2a3w:G, 2a3w:E, 2a3w:F, 2a3w:K, 2a3w:L, 2a3w:T, 2a3w:M, 2a3w:S, 2a3w:N, 2a3w:R, 2a3w:O, 2a3w:P, 2a3w:Q, 2a3x:A, 2a3x:B, 2a3x:C, 2a3x:J, 2a3x:D, 2a3x:E, 2a3x:F, 2a3x:G, 2a3x:H, 2a3x:I, 2a3y:A, 2a3y:B, 2a3y:C, 2a3y:D, 2a3y:E, 4avs:A, 4avs:B, 4avs:C, 4avs:D, 4avs:E, 4avt:A, 4avt:B, 4avt:C, 4avt:D, 4avt:E, 4avt:F, 4avt:G, 4avt:H, 4avt:I, 4avt:J, 4avv:E, 4avv:A, 4avv:B, 4avv:C, 4avv:D, 4ayu:A, 4ayu:B, 4ayu:C, 4ayu:D, 4ayu:E, 1gyk:A, 1gyk:B, 1gyk:C, 1gyk:D, 1gyk:E, 3kqr:A, 3kqr:B, 3kqr:C, 3kqr:D, 3kqr:E, 1lgn:A, 1lgn:B, 1lgn:C, 1lgn:D, 1lgn:E, 1sac:A, 1sac:B, 1sac:C, 1sac:D, 1sac:E, 2w08:A, 2w08:B, 2w08:C, 2w08:D, 2w08:E
15 4u94:A 451 36 0.2000 0.0244 0.3056 6.7 4u98:A, 4wzy:A
16 5b5m:C 317 37 0.2000 0.0347 0.2973 6.8 5b5m:o, 5b5n:C, 5b5n:o, 7c52:C, 1eys:C, 4v8k:AC, 4v8k:BC, 3wmm:C, 5y5s:C
17 7sj3:A 274 21 0.2000 0.0401 0.5238 6.9 5fwk:K, 6p8e:B
18 8sk0:B 330 27 0.1636 0.0273 0.3333 7.7 8shh:A, 8shh:B, 8sk0:A
19 5fmf:2 174 21 0.2000 0.0632 0.5238 9.1 3po3:S, 1y1v:S
20 7k0y:A 3669 25 0.2182 0.0033 0.4800 9.5
21 7z87:A 3689 25 0.2182 0.0033 0.4800 9.5
22 8eza:L 3720 25 0.2182 0.0032 0.4800 9.5 8eza:C, 7lt3:C, 7lt3:L
23 8ezb:C 3724 25 0.2182 0.0032 0.4800 9.5 8ezb:L
24 7su3:A 3802 25 0.2182 0.0032 0.4800 9.5
25 8bot:A 3528 25 0.2182 0.0034 0.4800 9.6
26 7nfc:A 3562 25 0.2182 0.0034 0.4800 9.6 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
27 7k1j:A 3584 25 0.2182 0.0033 0.4800 9.6 7k19:A
28 7nfe:A 3585 25 0.2182 0.0033 0.4800 9.6
29 7k1k:A 3604 25 0.2182 0.0033 0.4800 9.6 7k1b:A
30 7k1n:A 3634 25 0.2182 0.0033 0.4800 9.6 7z88:A
31 7k17:B 3645 25 0.2182 0.0033 0.4800 9.6 7k17:A
32 7otm:A 3656 25 0.2182 0.0033 0.4800 9.6 7otp:A, 7otv:A, 7otw:A, 7oty:A
33 8ez9:L 3662 25 0.2182 0.0033 0.4800 9.6 8ez9:C
34 6zha:A 3707 25 0.2182 0.0032 0.4800 9.6 6zh8:A
35 6zhe:F 3731 25 0.2182 0.0032 0.4800 9.6
36 7sud:A 3740 25 0.2182 0.0032 0.4800 9.8
37 6zhe:A 3768 25 0.2182 0.0032 0.4800 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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