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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ATVPRRHRYKKKWAATEPKFPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQKYGALVNNFAAWDHVSAKLEQLSAKDF
VNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVL
DLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPC
TTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQV
EDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGPMYFCKMRRLT

The query sequence (length=366) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pd3:x 366 366 1.0000 1.0000 1.0000 0.0 4fp9:A, 4fp9:C, 4fp9:D, 4fp9:F, 4fzv:A, 7o9k:A1, 7o9m:A1, 7odr:x, 7ods:x, 7odt:x, 7oic:x, 8pk0:x, 8qsj:x
2 7of5:C 338 358 0.9235 1.0000 0.9441 0.0 7of0:C, 7of3:C, 7of7:C
3 8esq:q 341 203 0.1803 0.1935 0.3251 3.43e-18
4 8fkt:SY 378 183 0.1694 0.1640 0.3388 4.13e-17 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
5 8v87:q 371 180 0.1694 0.1671 0.3444 1.99e-16 6elz:q, 6em5:q, 7nac:q, 7ohr:q, 7r7a:q, 7r7c:q, 8v83:q, 8v84:q
6 8esr:q 260 204 0.1803 0.2538 0.3235 2.82e-16
7 8i9w:CP 356 166 0.1667 0.1713 0.3675 4.80e-14 8i9r:CP, 8i9t:CP, 8i9v:CP, 8i9x:CP, 8i9y:CP, 8i9z:CP, 8ia0:CP
8 3m6w:A 460 175 0.1503 0.1196 0.3143 4.47e-13 3m6v:A, 3m6v:B
9 2yxl:A 443 167 0.1503 0.1242 0.3293 1.13e-12
10 5wwr:A 461 184 0.1557 0.1236 0.3098 2.38e-12 5wwr:B, 5wws:A, 5wws:B, 5wwt:A, 5wwt:B
11 1sqf:A 425 175 0.1421 0.1224 0.2971 2.59e-12
12 3a4t:A 258 188 0.1503 0.2132 0.2926 5.91e-12 3a4t:B
13 5zve:B 384 168 0.1339 0.1276 0.2917 1.14e-09 5zve:A, 5zvg:B, 5zvg:A, 5zvh:B, 5zvh:A
14 2b9e:A 275 194 0.1612 0.2145 0.3041 3.37e-06
15 7r6k:q 177 167 0.1366 0.2825 0.2994 1.18e-05
16 7pnx:b 326 90 0.0847 0.0951 0.3444 0.17 8ipk:A, 8ipl:A, 8ipm:D, 7pny:b, 7pnz:b, 8qrl:8
17 3p9i:A 357 61 0.0519 0.0532 0.3115 3.1 3p9c:A, 3p9i:B, 3p9i:C, 3p9i:D, 3p9k:A, 3p9k:B, 3p9k:C, 3p9k:D
18 7mqa:NL 278 46 0.0410 0.0540 0.3261 4.1 7wts:3, 1zq9:A, 1zq9:B
19 1u0l:A 278 32 0.0328 0.0432 0.3750 4.8 1u0l:B, 1u0l:C
20 6uff:A 362 94 0.0710 0.0718 0.2766 7.6 6uff:B, 6uff:C, 6uff:D, 6uff:E, 6uff:F, 6uff:G, 6uff:H
21 8esq:w 504 16 0.0246 0.0179 0.5625 9.6 8esr:w

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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