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BioLiP
>protein
ATVKQHVQLALSLPPRLRTFLARYPPASILPAGADPETHKTPYQEESPNPFMPTKHPITGKWHNPKYSLRRQAELVKLAQ
EHGVEELLPFTRKLNEEKLRKRVELGLRVKGTGVGEKVKGHKHERTLVAKMEKRREAMLAMPDLIREWKKVGKRNWTKFP
K

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ywe:b 161 161 1.0000 1.0000 1.0000 3.90e-116 6yws:b, 6ywv:b, 6ywx:b, 6ywy:b
2 3j6b:b 155 142 0.3727 0.3871 0.4225 1.20e-23 5mrc:b, 5mre:b, 5mrf:b
3 4lfl:B 172 51 0.0870 0.0814 0.2745 0.35 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
4 7px0:B 1253 38 0.1118 0.0144 0.4737 0.37 7px0:A, 7px0:C, 7px0:D
5 6sga:Fb 129 57 0.1118 0.1395 0.3158 0.58 7pua:Fb, 6sgb:Fb
6 1gk8:A 469 27 0.0745 0.0256 0.4444 0.66 3axm:A, 3axm:B, 3axm:C, 3axm:D, 3axm:E, 3axm:F, 3axm:G, 3axm:H, 1gk8:C, 1gk8:E, 1gk8:G, 4hhh:A, 4hhh:B, 4hhh:C, 4hhh:D, 1ir2:A, 1ir2:E, 1ir2:B, 1ir2:F, 1ir2:C, 1ir2:G, 1ir2:D, 1ir2:H, 1ir2:S, 1ir2:W, 1ir2:T, 1ir2:X, 1ir2:U, 1ir2:Y, 1ir2:V, 1ir2:Z, 7jfo:O, 7jfo:E, 7jfo:C, 7jfo:I, 7jfo:G, 7jfo:M, 7jfo:A, 4mkv:A, 4mkv:B, 4mkv:C, 4mkv:D, 8q05:A, 1rlc:L, 1uw9:A, 1uw9:B, 1uw9:E, 1uw9:K, 1uw9:H, 1uw9:O, 1uw9:V, 1uw9:R, 1uwa:A, 1uwa:O, 1uwa:B, 1uwa:E, 1uwa:H, 1uwa:V, 1uwa:K, 1uwa:R, 1uzd:A, 1uzd:B, 1uzd:E, 1uzd:K, 1uzd:H, 1uzd:R, 1uzd:O, 1uzd:V, 1uzh:A, 1uzh:B, 1uzh:E, 1uzh:K, 1uzh:H, 1uzh:R, 1uzh:O, 1uzh:V, 2v63:A, 2v63:B, 2v63:C, 2v63:D, 2v63:E, 2v63:F, 2v63:G, 2v63:H, 2v67:A, 2v67:B, 2v67:C, 2v67:D, 2v67:E, 2v67:F, 2v67:G, 2v67:H, 2v68:A, 2v68:B, 2v68:C, 2v68:D, 2v68:E, 2v68:F, 2v68:G, 2v68:H, 2v69:A, 2v69:B, 2v69:C, 2v69:D, 2v69:E, 2v69:F, 2v69:G, 2v69:H, 2v6a:A, 2v6a:B, 2v6a:C, 2v6a:D, 2v6a:E, 2v6a:F, 2v6a:G, 2v6a:H, 2vdh:A, 2vdh:B, 2vdh:C, 2vdh:D, 2vdh:E, 2vdh:F, 2vdh:G, 2vdh:H, 2vdi:A, 2vdi:B, 2vdi:C, 2vdi:D, 2vdi:E, 2vdi:F, 2vdi:G, 2vdi:H
7 6ura:A 441 79 0.1366 0.0499 0.2785 1.1 6ura:B, 6ura:C, 6ura:D
8 4iil:A 314 62 0.0870 0.0446 0.2258 1.1
9 1rbo:L 467 27 0.0683 0.0236 0.4074 1.3 1aa1:L, 1aa1:B, 1aa1:E, 1aa1:H, 1aus:L, 1aus:M, 1aus:N, 1aus:O, 3axk:A, 3axk:B, 1ej7:L, 1ir1:A, 1ir1:B, 1ir1:C, 1ir1:D, 5iu0:A, 5iu0:B, 8qj0:L, 8qj0:M, 8qj0:N, 8qj0:O, 1rbo:B, 1rbo:E, 1rbo:H, 1rco:L, 1rco:B, 1rco:E, 1rco:H, 1rco:K, 1rco:O, 1rco:R, 1rco:V, 1rcx:L, 1rcx:B, 1rcx:E, 1rcx:H, 1rcx:K, 1rcx:O, 1rcx:R, 1rcx:V, 4rub:A, 4rub:D, 4rub:B, 4rub:C, 8ruc:A, 8ruc:C, 8ruc:E, 8ruc:G, 1rxo:L, 1rxo:B, 1rxo:E, 1rxo:H, 1upm:B, 1upm:L, 1upm:E, 1upm:H, 1upm:K, 1upm:O, 1upm:R, 1upm:V, 1upp:A, 1upp:C, 1upp:E, 1upp:G, 1wdd:A, 1wdd:E, 5wsk:A, 5wsk:B, 5wsk:C, 5wsk:D
10 4cq6:B 174 46 0.1304 0.1207 0.4565 1.4 4cq6:C, 4cq7:A, 4cq7:B, 2dio:B
11 3k7p:A 153 33 0.0683 0.0719 0.3333 1.5 3k7p:B, 3k7s:A, 3k7s:B, 3k7s:C, 3k7s:D, 3k8c:A, 3k8c:B, 3m1p:A, 3m1p:B
12 8uhi:A 465 27 0.0745 0.0258 0.4444 1.7 8uhi:B, 8uhi:C, 8uhi:D, 8uhi:E, 8uhi:F, 8uhi:G, 8uhi:H, 3zxw:A, 3zxw:C, 3zxw:E, 3zxw:G
13 7qsw:C 467 27 0.0745 0.0257 0.4444 1.9 7qsw:A, 7qsw:E, 7qsw:G
14 8u66:A 448 80 0.1553 0.0558 0.3125 2.3 8u66:B, 8u66:C, 8u66:D, 8u66:E, 8u66:F, 8u66:G, 8u66:H
15 7qt1:C 452 27 0.0745 0.0265 0.4444 2.4 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
16 7smk:A 455 27 0.0745 0.0264 0.4444 2.8 7snv:A
17 1rbl:A 467 74 0.1366 0.0471 0.2973 2.9 1rbl:B, 1rbl:C, 1rbl:D, 1rbl:E, 1rbl:F, 1rbl:G, 1rbl:H, 1rsc:A, 1rsc:B, 1rsc:C, 1rsc:D, 1rsc:E, 1rsc:F, 1rsc:G, 1rsc:H
18 4nu7:C 227 113 0.1615 0.1145 0.2301 3.9 4nu7:A, 4nu7:B, 4nu7:D
19 6mu0:A 152 98 0.1615 0.1711 0.2653 4.9
20 6xyw:AK 87 34 0.0870 0.1609 0.4118 5.2
21 7lsy:Y 855 41 0.0870 0.0164 0.3415 5.3 6bkg:A, 4htp:A, 4htp:B, 3w1b:A, 3w1g:A, 3w5o:A, 3w5o:B
22 8pu0:A 1157 35 0.0807 0.0112 0.3714 5.3
23 6z1f:A 466 27 0.0683 0.0236 0.4074 5.6 6z1f:B, 6z1f:C, 6z1f:D, 6z1f:E, 6z1f:F, 6z1f:G, 6z1f:H
24 8ptx:A 1215 35 0.0807 0.0107 0.3714 5.9
25 7dmw:A 200 35 0.0807 0.0650 0.3714 6.0 7dmw:B, 7dmw:C, 7dmw:D, 7dmw:E
26 6bkf:A 562 41 0.0870 0.0249 0.3415 6.1
27 6lvw:A 668 52 0.1180 0.0284 0.3654 7.8
28 7d1c:A 491 62 0.1366 0.0448 0.3548 8.3 4ct0:A, 7d19:A, 7d19:B, 7dli:A, 7dli:B, 7dli:C, 6kx5:A, 6kx6:A, 6kx6:B, 6kx7:A, 6lue:A, 6lue:B, 7wva:A
29 6pl0:B 608 57 0.1056 0.0280 0.2982 8.7 5akp:A, 5akp:B, 7l59:A, 6ndo:A, 6ndo:B, 6ndp:A, 6ndp:B, 6pl0:A, 5uyr:A, 5uyr:B
30 2bb6:A 414 43 0.0807 0.0314 0.3023 8.8 2bb6:B, 2bb6:C, 2bb6:D, 2bbc:A, 2v3n:A, 2v3p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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