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BioLiP
>protein
ATVAPDTRSLDEIYQSALKEGGTVTVYAGGDVQSQQAGFKQAFENRFPGIKLNVIVDYSKYHDARIDNQLATDTLIPDVV
QLQTVQDFPRWKKQGVLLNYKPVGWDKVYPEFRDADGAWIGAYVIAFSNLVNTQLLNEKSWPREANDYLRPDLKGNLILA
YPNDDDAVLFWYKQIVDKYGWEFVEKLQEQDPVYVRGTNVPGAQITTGKYSATFTSSGALVPAAGSVTRFVLPKTDPFVS
WAQRAAIFKQAKHPESAKLYLSWLLDPQTQTQVSRMWSVRTDVAPPAGYKHIWEYSNTRPQAFADFMSDRGAVERFRAQM
SLYVGEAKGDPTPGWLGLHPEVPLA

The query sequence (length=345) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hhb:A 345 345 1.0000 1.0000 1.0000 0.0 6hhb:B, 6hhb:C, 6hhb:D
2 6wce:A 314 190 0.1449 0.1592 0.2632 2.13e-07
3 6hur:A 428 74 0.0667 0.0537 0.3108 0.011 6hus:A
4 6ivy:B 307 263 0.1565 0.1759 0.2053 0.13 6ivy:A, 6j2s:A, 6j2s:B
5 8x1a:B 319 148 0.1014 0.1097 0.2365 0.16
6 7f6e:B 341 65 0.0638 0.0645 0.3385 0.23 7f6e:A, 7f6e:C, 7f6f:A, 7f6f:B, 7f6n:A, 7f6n:B, 7f6n:C, 7f6o:A, 7f6o:B, 7f6q:A, 7f6r:A, 7f6s:A, 7f6u:A
7 5t1p:D 328 203 0.1362 0.1433 0.2315 0.25 5t1p:A, 5t1p:B, 5t1p:C
8 1slm:A 226 118 0.0870 0.1327 0.2542 2.7 1b3d:A, 1b3d:B, 1b8y:A, 1biw:A, 1biw:B, 1bm6:A, 1bqo:A, 1bqo:B, 1c3i:A, 1c3i:B, 1c8t:A, 1c8t:B, 1caq:A, 1ciz:A, 1cqr:A, 1cqr:B, 2d1o:A, 2d1o:B, 1d5j:A, 1d5j:B, 1d7x:A, 1d7x:B, 1d8f:A, 1d8f:B, 1d8m:A, 1d8m:B, 4dpe:A, 4dpe:B, 1g05:A, 1g05:B, 1g49:A, 1g49:B, 1g4k:A, 1g4k:B, 1g4k:C, 4g9l:A, 4g9l:B, 1hfs:A, 1hy7:A, 1hy7:B, 4ja1:A, 4ja1:B, 2jnp:A, 2jt5:A, 2jt6:A, 6mav:A, 6n9d:A, 3ohl:A, 3oho:A, 1qia:A, 1qia:B, 1qia:C, 1qia:D, 1qic:A, 1qic:B, 1qic:C, 1qic:D, 7s7l:A, 7s7m:A, 1sln:A, 2srt:A, 1uea:A, 1uea:C, 1ums:A, 1umt:A, 1usn:A, 2usn:A, 3usn:A
9 6zcv:A 562 67 0.0638 0.0391 0.3284 4.0 6zcw:A
10 1eso:A 154 36 0.0464 0.1039 0.4444 6.5
11 8ka5:A 297 44 0.0435 0.0505 0.3409 9.1 8ka3:A, 8ka4:B, 8ka4:C
12 7s9w:B 529 64 0.0551 0.0359 0.2969 9.5
13 4csw:A 388 34 0.0348 0.0309 0.3529 9.6 4csw:B, 4cug:A, 4cug:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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