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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATTAKEEMARFWEKNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSP
ALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSSAGIAAI

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wqy:C 140 139 0.9928 0.9857 0.9928 8.46e-98 2fbw:C, 2fbw:P, 2h88:C, 2h88:P, 2h89:C, 6myo:C, 6myp:C, 6myq:C, 6myr:C, 6mys:C, 6myt:C, 6myu:C, 2wqy:P, 1yq3:C, 1yq4:C
2 3sfe:C 139 139 0.7122 0.7122 0.7122 2.85e-72 3abv:C, 3ae1:C, 3ae2:C, 3ae3:C, 3ae4:C, 3ae5:C, 3ae6:C, 3ae7:C, 3ae8:C, 3ae9:C, 3aea:C, 3aeb:C, 3aec:C, 3aed:C, 3aee:C, 3aef:C, 3aeg:C, 8gs8:C, 3sfd:C, 4ytp:C, 4yxd:C, 1zoy:C, 1zp0:C
3 4ysx:G 155 118 0.2662 0.2387 0.3136 1.43e-16 5c2t:C, 5c2t:G, 5c3j:C, 5c3j:G, 3vr8:C, 3vr8:G, 3vr9:C, 3vr9:G, 3vra:C, 3vra:G, 3vrb:C, 3vrb:G, 4ysx:C, 4ysy:C, 4ysy:G, 4ysz:C, 4ysz:G, 4yt0:C, 4yt0:G, 4ytm:C, 4ytm:G, 4ytn:C, 4ytn:G
4 2acz:C 129 103 0.2158 0.2326 0.2913 3.73e-05 7jz2:C, 7jz2:G, 7jz2:K, 1nek:C, 1nen:C, 2wdq:C, 2wdq:G, 2wdq:K, 2wdr:C, 2wdr:G, 2wdr:K, 2wdv:C, 2wdv:G, 2wdv:K, 2wp9:C, 2wp9:G, 2wp9:K, 2ws3:C, 2ws3:G, 2ws3:K, 2wu2:C, 2wu2:G, 2wu2:K, 2wu5:C, 2wu5:G, 2wu5:K, 6wu6:C, 6wu6:G, 6wu6:K
5 1sp8:D 393 19 0.0791 0.0280 0.5789 2.1 1sp8:A, 1sp8:B, 1sp8:C, 7x7l:A, 7x7l:B, 7x7l:C, 7x7l:D
6 3gnr:A 478 25 0.0504 0.0146 0.2800 2.7 3wba:A, 3wbe:A
7 6ola:A0 196 41 0.0863 0.0612 0.2927 3.2 6e2z:A6, 6e32:A1, 6e32:AN, 6e34:AA, 6e39:A1, 6e39:A5, 6ola:A1, 6ola:A2, 6ola:A3, 6ola:A4, 6ola:A5, 6ola:A6, 6ola:A7, 6ola:A8, 6ola:A9, 6ola:AA, 6ola:AB, 6ola:AC, 6ola:AD, 6ola:AE, 6ola:AF, 6ola:AG, 6ola:AH, 6ola:AI, 6ola:AJ, 6ola:AK, 6ola:AL, 6ola:AM, 6ola:AN, 6ola:AO, 6ola:AP, 6ola:AQ, 6ola:AR, 6ola:AS, 6ola:AT, 6ola:AU, 6ola:AV, 6ola:AW, 6ola:AX, 6ola:AY, 6ola:AZ, 6ola:Aa, 6ola:Ab, 6ola:Ac, 6ola:Ad, 6ola:Ae, 6ola:Af, 6ola:Ag, 6ola:Ah, 6ola:Ai, 6ola:Aj, 6ola:Ak, 6ola:Al, 6ola:Am, 6ola:An, 6ola:Ao, 6ola:Ap, 6ola:Aq, 6ola:Ar, 6ola:As, 6ola:At, 6ola:Au, 6ola:Av, 6ola:Aw, 6ola:Ax, 3r0r:A
8 3ps9:A 668 42 0.0863 0.0180 0.2857 4.0 3awi:A, 3awi:B, 3awi:C, 3awi:D, 3awi:E, 3awi:F
9 2jal:B 444 25 0.0576 0.0180 0.3200 7.2 2cbu:A, 2cbu:B, 2cbv:A, 2cbv:B, 2ces:A, 2ces:B, 2cet:A, 2cet:B, 2j75:A, 2j75:B, 2j77:A, 2j77:B, 2j78:A, 2j78:B, 2j79:A, 2j79:B, 2j7b:A, 2j7b:B, 2j7c:A, 2j7c:B, 2j7d:A, 2j7d:B, 2j7e:A, 2j7e:B, 2j7f:A, 2j7f:B, 2j7g:A, 2j7g:B, 2j7h:A, 2j7h:B, 2jal:A, 5n6s:A, 5n6s:B, 5n6s:C, 5n6s:D, 5n6t:A, 5n6t:B, 1oif:A, 1oif:B, 1oim:A, 1oim:B, 1oin:A, 1oin:B, 5oss:B, 1uz1:A, 1uz1:B, 2vrj:A, 2vrj:B, 1w3j:A, 1w3j:B, 2wbg:A, 2wbg:B, 2wbg:C, 2wbg:D, 2wc3:A, 2wc3:B, 2wc3:C, 2wc3:D, 2wc4:A, 2wc4:B, 2wc4:C, 2wc4:D
10 8d3x:A 989 31 0.1079 0.0152 0.4839 9.0 8d3u:A, 8d3w:A
11 5i4m:A 414 19 0.0719 0.0242 0.5263 9.3 5i4m:B, 5thw:A, 5thw:B, 5thw:C, 5thw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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