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BioLiP
>protein
ATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACT
KKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCST
SCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYK
E

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yq3:B 242 241 1.0000 0.9959 1.0000 0.0 2fbw:B, 2fbw:O, 8gs8:B, 2h88:B, 2h88:O, 2h89:B, 6myo:B, 6myp:B, 6myq:B, 6myr:B, 6mys:B, 6myt:B, 6myu:B, 2wqy:B, 2wqy:O, 1yq4:B
2 3sfe:B 240 238 0.8921 0.8958 0.9034 2.49e-167 3abv:B, 3ae1:B, 3ae2:B, 3ae3:B, 3ae4:B, 3ae5:B, 3ae6:B, 3ae7:B, 3ae8:B, 3ae9:B, 3aea:B, 3aeb:B, 3aec:B, 3aed:B, 3aee:B, 3aef:B, 3aeg:B, 7kcm:C, 3sfd:B, 4ytp:B, 4yxd:B, 1zoy:B, 1zp0:B
3 4ysx:F 252 237 0.7012 0.6706 0.7131 7.47e-131 5c2t:B, 5c2t:F, 5c3j:B, 5c3j:F, 3vr8:B, 3vr8:F, 3vr9:B, 3vr9:F, 3vra:B, 3vra:F, 3vrb:B, 3vrb:F, 4ysx:B, 4ysy:B, 4ysy:F, 4ysz:B, 4ysz:F, 4yt0:B, 4yt0:F, 4ytm:B, 4ytm:F, 4ytn:B, 4ytn:F
4 8b6g:CB 285 238 0.5394 0.4561 0.5462 5.08e-96 8bqs:CB, 8gym:sb, 8gym:SB, 8gzu:sb, 8gzu:SB
5 2acz:B 238 233 0.5311 0.5378 0.5494 1.56e-86 7jz2:B, 7jz2:F, 7jz2:J, 1nek:B, 1nen:B, 2wdq:B, 2wdq:F, 2wdq:J, 2wdr:B, 2wdr:F, 2wdr:J, 2wdv:B, 2wdv:F, 2wdv:J, 2wp9:B, 2wp9:F, 2wp9:J, 2ws3:B, 2ws3:F, 2ws3:J, 2wu2:B, 2wu2:F, 2wu2:J, 2wu5:B, 2wu5:F, 2wu5:J, 6wu6:B, 6wu6:F, 6wu6:J
6 6lum:K 247 237 0.3859 0.3765 0.3924 3.03e-51 6lum:B, 6lum:Q
7 2b76:B 243 228 0.3071 0.3045 0.3246 1.53e-32 6awf:B, 6awf:F, 2b76:N, 3cir:B, 3cir:N, 1kf6:B, 1kf6:N, 1kfy:B, 1kfy:N, 4kx6:B, 4kx6:N, 1l0v:B, 1l0v:N, 3p4p:B, 3p4p:N, 3p4q:B, 3p4q:N, 3p4r:B, 3p4r:N, 3p4s:B, 3p4s:N, 5vpn:B, 5vpn:F
8 5xmj:B 240 241 0.2905 0.2917 0.2905 2.39e-29 5xmj:F, 5xmj:J, 5xmj:N
9 2bs2:B 239 238 0.2905 0.2929 0.2941 3.87e-29 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
10 7d6v:B 239 236 0.2531 0.2552 0.2585 1.95e-16 7d6x:B
11 7uqj:A 585 129 0.1411 0.0581 0.2636 0.058 7uqi:A, 7uqi:B, 7uqi:C, 7uqi:D, 7uqj:C, 7uqj:D, 7uqj:E, 7uqj:F, 7uqj:B, 7uqk:A, 7uqk:B, 7uqk:C, 7uqk:D
12 6icm:D 87 51 0.0664 0.1839 0.3137 0.080
13 8rbq:C 477 18 0.0498 0.0252 0.6667 0.16 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
14 7qv7:D 448 100 0.0954 0.0513 0.2300 0.25 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
15 6cbj:L 212 57 0.0664 0.0755 0.2807 0.74 8say:D, 8say:I, 8say:N
16 5y6q:A 157 65 0.0747 0.1146 0.2769 0.77
17 4rf7:B 700 115 0.1120 0.0386 0.2348 1.0 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
18 4hea:9 180 77 0.0913 0.1222 0.2857 1.4 2fug:9, 2fug:G, 2fug:P, 2fug:Y, 4hea:O, 6i0d:9, 6i0d:O, 6i1p:9, 6i1p:O, 3i9v:9, 3i9v:G, 3iam:9, 3iam:G, 3ias:9, 3ias:G, 3ias:P, 3ias:Y, 3m9s:9, 3m9s:G, 6q8o:9, 6q8o:O, 6q8w:9, 6q8w:O, 6q8x:9, 6q8x:O, 6y11:9, 6y11:O, 2ybb:8, 6ziy:9, 6zjl:9, 6zjn:9, 6zjy:9
19 7bkb:C 189 84 0.0913 0.1164 0.2619 2.2 7bkb:c, 7bkc:C, 7bkc:c, 7bkd:C, 7bkd:c, 7bke:C, 7bke:c
20 7ane:aa 1514 32 0.0539 0.0086 0.4062 2.3
21 7akt:A 107 26 0.0456 0.1028 0.4231 2.5 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
22 5odc:C 184 92 0.0913 0.1196 0.2391 3.8 5odc:I, 5odh:C, 5odh:I, 5odi:C, 5odi:I, 5odq:C, 5odq:I, 5odr:C, 5odr:I
23 7uqi:E 558 131 0.1369 0.0591 0.2519 4.6 7uqk:E
24 6u2m:A 464 123 0.1245 0.0647 0.2439 4.7 8aht:C, 1ak8:A, 3b32:A, 7cqv:E, 5dsu:A, 2i08:A, 1j7o:A, 6jiu:C, 6jiu:F, 6jiu:I, 6jiu:L, 2kug:A, 6pjx:B, 2pq3:A, 4q57:A, 6u2m:C, 3uct:B, 3ucw:C, 3ucy:A
25 5bwe:A 857 89 0.0996 0.0280 0.2697 5.0 5bwd:A, 5bwe:D
26 4i2y:A 381 34 0.0498 0.0315 0.3529 6.0 4i2y:B
27 6yac:N 97 19 0.0415 0.1031 0.5263 6.1 6yez:N
28 6hiv:DA 1557 35 0.0622 0.0096 0.4286 7.3 6hiw:DA, 7pub:DA
29 4eac:C 396 126 0.1286 0.0783 0.2460 7.5 4eac:A, 4eac:B, 4eac:D, 4eay:A, 4eay:B, 4eay:C, 4eay:D
30 3o78:A 402 27 0.0373 0.0224 0.3333 7.6 7aug:A, 3ek4:A, 3ek7:A, 3ek8:A, 3ekh:A, 3evr:A, 3evu:A, 3evv:A, 4ik1:A, 4ik3:A, 4ik4:A, 4ik5:A, 4ik8:A, 4ik9:A, 3o77:A, 3o78:B, 3sg2:A, 3sg3:A, 3sg4:A, 3sg5:A, 3sg6:A, 3sg7:A, 7st4:A, 6tv7:A, 3wlc:A, 3wld:A, 6ya9:A, 6zsm:A, 6zsn:A
31 8sau:D 110 26 0.0373 0.0818 0.3462 7.6 8sau:I, 8sau:N
32 6hiy:DA 1426 35 0.0622 0.0105 0.4286 7.8
33 7aor:aa 1558 28 0.0539 0.0083 0.4643 8.7
34 7b0n:I 191 79 0.0996 0.1257 0.3038 9.7 6gcs:I, 7o6y:I, 7o71:I, 6rfq:I, 6rfr:I, 6rfs:I, 6y79:I, 6yj4:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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