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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATSQPINFQVQKDGSSEKSHMDDYMQHPGKVIKQNNKYYFQTVLNNASFWKEYKFYNANNQELATTVVNDNKKADTRTIN
VAVEPGYKSLTTKVHIVVPQINYNHRYTTHLEFEKAIPTLA

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qzp:B 125 121 1.0000 0.9680 1.0000 2.11e-88 2itf:A, 2itf:B, 2itf:C, 2itf:D, 3qzl:A, 3qzm:A, 3qzm:B, 3qzn:A, 3qzn:B, 3qzn:C, 3qzo:A, 3qzo:C, 3qzo:B, 3qzo:D, 3qzp:A
2 3sik:A 123 109 0.2893 0.2846 0.3211 5.78e-11 3sik:B
3 4h8q:A 119 110 0.2645 0.2689 0.2909 8.48e-10 4h8p:A
4 4ymp:A 112 101 0.2066 0.2232 0.2475 0.002 4ymp:C
5 2k78:A 126 50 0.1570 0.1508 0.3800 0.004 2o6p:A, 2o6p:B
6 7pcf:F 341 89 0.1901 0.0674 0.2584 0.012 7pch:E, 7pch:F, 3rtl:A, 3rtl:B, 3rtl:C, 3rtl:D, 3rur:A, 3rur:B, 3rur:C, 3rur:D, 5vmm:F, 5vmm:E
7 7pcf:F 341 89 0.2066 0.0733 0.2809 0.058 7pch:E, 7pch:F, 3rtl:A, 3rtl:B, 3rtl:C, 3rtl:D, 3rur:A, 3rur:B, 3rur:C, 3rur:D, 5vmm:F, 5vmm:E
8 7w81:A 181 104 0.2066 0.1381 0.2404 0.19 3qug:A, 3qug:B, 3quh:A, 3quh:B, 3vtm:A, 3vtm:B, 7w81:B, 2z6f:A
9 8ap0:AAA 332 26 0.1074 0.0392 0.5000 0.64 8aoz:AAA, 6yqq:A
10 8rf0:A 2780 58 0.1074 0.0047 0.2241 1.4 8rfe:A, 8rfg:A
11 1g8s:A 230 108 0.2231 0.1174 0.2500 2.6
12 8c2z:A 334 52 0.1240 0.0449 0.2885 3.2
13 3wmt:A 503 51 0.1240 0.0298 0.2941 3.8 3wmt:B
14 8fqc:A 168 27 0.1074 0.0774 0.4815 7.0
15 7qh2:C 467 24 0.0909 0.0236 0.4583 7.8 7qh2:F
16 8pz4:A 466 33 0.0909 0.0236 0.3333 9.0 7acg:A, 4afk:A, 4azl:A, 4azl:B, 4b61:A, 4b61:B, 8q2o:A, 3rbh:A, 3rbh:B, 8rqp:A, 4xnk:A, 4xnl:A
17 3rbh:D 410 33 0.0909 0.0268 0.3333 9.0 3rbh:C
18 5d5d:A 403 33 0.0909 0.0273 0.3333 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218