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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATSGLLHTSTASDKIISGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTGRRIKVLNHHGETGDMADFSPDHA
IMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVADGKIPEKMPENGVSGELGLRLSSGNLEKLTSGGINIGLGKNFVLHT
EGLYRKSGDYAVPRYRNLKRLPDSHADSQTGSIGLSWVGEKGFIGVAYSDRRDQYGLPAHGRPWIDLRNKRYELRAEWKQ
PFPGFEALRVHLNRNDYRHDEKAGDAVENFFNNQTQNARIELRHQPIGRLKGSWGVQYLQQKSSALSAISEAVKQPMLLD
NKVQHYSFFGVEQANWDNFTLEGGVRVEKQKASIRQTARSFALSGNWYFTPQHKLSLTASHQERLPSTQELYAHGKHVAT
NTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNRFGNYIYAQTLNDGRGPKSEMKLVRYNQSGADFYGAEGEIYF
KPTPRYRIGVSGDYVRGRLKNLPDDQNAPRVPAARLGFHLKASLTDRIDANLDYYRVFAQNKLARYETRTPGHHMLNLGA
NYRRNTRYGEWNWYVKADNLLNQSVYAHSSFLSDTPQMGRSFTGGVNVKF

The query sequence (length=610) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rvw:A 610 610 1.0000 1.0000 1.0000 0.0
2 4rdt:A 635 638 0.9918 0.9528 0.9483 0.0 4rdt:B
3 4rdr:A 706 702 1.0000 0.8640 0.8689 0.0
4 2gsk:A 590 539 0.1967 0.2034 0.2226 3.90e-05 3m8d:A, 1nqg:A, 1nqh:A, 1ujw:A
5 6z99:B 658 157 0.0705 0.0653 0.2739 2.79e-04 6fok:A, 6fok:B, 6fom:A, 6fom:B, 6z8q:A, 6z8q:B, 6z8r:A, 6z8r:B, 6z8s:A, 6z8s:B, 6z8t:A, 6z8t:B, 6z8u:A, 6z8u:B, 6z91:A, 6z91:B, 6z99:A, 6z9n:A, 6z9n:B, 6z9n:C, 6z9n:D, 6z9y:A, 6z9y:B, 6z9y:C, 6z9y:D
6 8the:A 712 318 0.1148 0.0983 0.2201 7.08e-04
7 8the:A 712 122 0.0574 0.0492 0.2869 0.059
8 2guf:A 551 101 0.0508 0.0563 0.3069 0.009 3m8b:A, 1nqe:A, 1nqf:A, 3rgm:A, 3rgn:A
9 5fp2:B 538 61 0.0344 0.0390 0.3443 0.11
10 5fp2:A 499 47 0.0279 0.0341 0.3617 0.22
11 9c4o:A 661 134 0.0590 0.0545 0.2687 0.68 6v81:A
12 6h7f:A 671 132 0.0623 0.0566 0.2879 1.0 6h7f:B, 6h7f:C, 6h7v:B, 6hcp:A, 6hcp:B, 6hcp:C
13 1fi1:A 707 51 0.0262 0.0226 0.3137 1.4 8a8c:A, 8b14:A, 1by5:A, 4cu4:A, 1fcp:A, 2fcp:A, 2grx:A, 2grx:B, 1qff:A, 1qjq:A, 1qkc:A
14 6i97:A 763 132 0.0541 0.0433 0.2500 1.8 8b43:A, 6i96:A, 6i97:B, 6i98:A, 6z8a:A
15 1po0:A 661 140 0.0590 0.0545 0.2571 4.8 1po3:A, 1po3:B
16 5fr8:A 707 30 0.0180 0.0156 0.3667 7.0 5fr8:B
17 1xkw:A 655 31 0.0230 0.0214 0.4516 7.0
18 6bpn:A 656 90 0.0426 0.0396 0.2889 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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