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BioLiP
>protein
ATRLIQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKTEKKAVTPA
PPIKRWELSSDQPYL

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vb7:I 97 95 0.9158 0.8969 0.9158 1.05e-61 5lnk:h, 6q9d:A7, 7vbn:I, 7vbz:I, 7vwj:I, 7vxp:I, 7vxu:I, 7vy8:I, 7vya:I, 7vyf:I, 7vyh:I, 7vyn:I, 7vz1:I, 5xtb:I
2 3qg6:B 209 37 0.1263 0.0574 0.3243 0.38 3qg6:H
3 2bpa:1 426 30 0.1263 0.0282 0.4000 1.1
4 1gff:1 417 30 0.1263 0.0288 0.4000 1.3
5 1pp9:O 424 19 0.1053 0.0236 0.5263 1.8 2a06:B, 4d6t:B, 4d6t:O, 4d6u:B, 4d6u:O, 7dgq:l, 7dgq:x, 7dgr:l, 7dgr:x, 7dgs:l, 7dgs:x, 6fo0:O, 6fo0:B, 6fo2:O, 6fo2:B, 1pp9:B, 1ppj:O, 1ppj:B, 6qbx:a2, 6qbx:a4, 6qc3:a2, 6qc3:a4, 7tz6:B, 7tz6:O
6 8eju:B 257 76 0.2526 0.0934 0.3158 2.7 8eju:A
7 5fzo:A 339 32 0.0947 0.0265 0.2812 3.6 5fzo:B, 2ypd:A, 2ypd:B
8 1m06:F 422 37 0.1368 0.0308 0.3514 5.0 1rb8:F
9 7u0h:q 189 42 0.1368 0.0688 0.3095 6.0
10 2y1h:B 265 43 0.1684 0.0604 0.3721 8.9 2y1h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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