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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATPSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCAARAQ
EARKMRSIQETLGESGSLLPNKLNKLLQRFPNKPYL

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8any:A2 117 116 1.0000 0.9915 1.0000 6.01e-83 7a5f:c6, 7a5g:c6, 7a5i:c6, 7a5k:c6, 3j9m:A2, 8k2a:Sm, 7l08:A2, 6nu2:A2, 6nu3:A2, 7og4:A2, 8oir:Ac, 8ois:Ac, 7p2e:2, 7po1:2, 7po2:2, 7po3:2, 7qi4:A2, 7qi5:A2, 7qi6:A2, 8qrm:2, 8qrn:2, 6rw4:2, 6rw5:2, 6vlz:A2, 6vmi:A2, 8xt0:Sm, 8xt2:Sm, 6zm5:A2, 6zm6:A2, 6zs9:A2, 6zsa:A2, 6zsb:A2, 6zsc:A2, 6zsd:A2, 6zse:A2, 6zsg:A2
2 3jd5:m 118 116 0.8534 0.8390 0.8534 7.37e-71 5aj3:m, 5aj4:Am, 6gaw:Am, 6gaz:Am, 6neq:m, 6nf8:m, 7nqh:Am, 7nql:Am, 7nsi:Am, 7nsj:Am, 8oin:Ac, 8oip:Ac, 6ydp:Am, 6ydw:Am
3 7pnw:2 117 116 0.8362 0.8291 0.8362 4.04e-70
4 6yw5:11 88 47 0.1379 0.1818 0.3404 0.20 6ywe:11, 6ywx:11, 6ywy:11
5 6z6b:PPP 2036 59 0.1466 0.0083 0.2881 2.4 6z6b:EEE
6 4i8p:A 500 47 0.1379 0.0320 0.3404 5.2 4i8p:B
7 7ood:k 148 52 0.1466 0.1149 0.3269 7.0 7p6z:k, 7pah:k, 7pai:k, 7paj:k, 7pak:k, 7pal:k, 7pam:k, 7pan:k, 7pao:k, 7paq:k, 7par:k, 7pas:k, 7pat:k, 7pau:k, 7ph9:k, 7pha:k, 7phb:k, 7phc:k, 7pi8:k, 7pi9:k, 7pia:k, 7pib:k, 7pic:k, 7pio:k, 7pip:k, 7piq:k, 7pir:k, 7pis:k, 7pit:k
8 7orj:A 2129 47 0.1034 0.0056 0.2553 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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