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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATPRWTREHASKIERTDETVVPIIYPPREDAAPEINGWDTWFLRERDGSIATVGGWRVIFSLTAPADLLPGKRHDVAEIR
YFYSRDGETWFDGGPVFEGGTRGSRQWAGSALLDDDGRLYVFYTASGRAGEAEITYEQRLAVGSGGSVVADDDGVRIEGP
FAHGVLLEPDGERYEREEQSRGMIYTFRDPWFFEDPRSGKTYLLFEANTPIPEGAGACGDPVWEEFNGSVGIAHSPTGDP
TDWELCDPLLEGICVNQELERPHVVVRNGFYYLFVSSHDHTFAPGLEGPDGLYGFVADSLRGEYRPLNGSGLVLTNPANA
PYQAYSWVAFSHREELLVSGFFNYYDLGGLTLDDVATLSPDEQRAKFGGTLAPTVRVALSGDRTRITGTLSHGRIPLESE
ELPDL

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bj4:A 406 405 1.0000 0.9975 1.0000 0.0 7bj4:B, 7bj4:C, 7bj4:D, 7bj4:E, 7bj4:F, 7bj4:G, 7bj4:H, 7bj4:I, 7bj4:J, 7bjc:A, 7bjc:B, 7bjc:C, 7bjc:D, 7bjc:E, 7bjc:F, 7bjc:G, 7bjc:H, 7bjc:I, 7bjc:J
2 7fdz:A 417 424 0.3802 0.3693 0.3632 7.62e-69
3 8qj5:A 412 427 0.3753 0.3689 0.3560 7.52e-67
4 7oso:A 412 427 0.3728 0.3665 0.3536 7.94e-67 4d47:A, 4d47:B, 4d47:C, 4d47:D, 4d47:E, 4d47:F, 4d47:G, 4d47:H, 6frw:A, 6rv5:A
5 3vss:A 494 454 0.3630 0.2976 0.3238 5.31e-59
6 8i2r:A 477 448 0.3481 0.2956 0.3147 1.29e-55 6m0e:A
7 3byj:A 440 335 0.2321 0.2136 0.2806 1.09e-27 3byk:A, 3byn:A, 1oyg:A, 1pt2:A, 6pwq:A, 6pwq:B, 2vdt:A, 6vhq:A, 6vhq:B
8 3om2:A 448 384 0.2321 0.2098 0.2448 1.84e-27 3om4:A, 3om4:B, 3om4:C, 3om4:D, 3om5:A, 3om5:B, 3om5:C, 3om5:D, 3om6:A, 3om6:B, 3om6:C, 3om6:D, 3om7:C, 3om7:A, 3om7:B, 3om7:D
9 2yfr:A 533 355 0.2222 0.1689 0.2535 8.61e-20 2yfs:A, 2yft:A
10 4u6d:B 385 182 0.1185 0.1247 0.2637 0.46 4u6d:A
11 8a22:Bh 374 67 0.0469 0.0508 0.2836 0.75 8apn:Bh, 8apo:Bh
12 6a8i:A 318 18 0.0296 0.0377 0.6667 0.80 6a8h:A, 6a8i:B, 3d5z:A, 3d61:A, 6f1g:A
13 4u6b:A 343 94 0.0691 0.0816 0.2979 0.88 4u6b:B, 4u6b:C, 4u6b:D
14 5erp:A 443 56 0.0444 0.0406 0.3214 1.3 5erp:B
15 4kc8:A 449 68 0.0543 0.0490 0.3235 1.3
16 6b7k:A 290 65 0.0494 0.0690 0.3077 1.8 6b7k:B, 6b7k:C, 6b7k:D
17 3kpx:A 189 39 0.0370 0.0794 0.3846 2.1
18 3nxl:C 425 82 0.0642 0.0612 0.3171 2.6 3nxl:A, 3nxl:B, 3nxl:D
19 3vsz:C 482 35 0.0321 0.0270 0.3714 3.2 3vsz:A, 3vsz:B, 3vsz:E, 3vsz:F, 3vt0:A, 3vt0:B, 3vt0:C, 3vt0:E, 3vt0:F, 3vt1:B, 3vt1:C, 3vt1:E, 3vt1:F, 3vt1:A, 3vt2:A, 3vt2:B, 3vt2:C, 3vt2:D, 3vt2:E, 3vt2:F
20 1kdk:A 177 111 0.0815 0.1864 0.2973 7.3 1d2s:A, 1f5f:A, 1kdm:A, 1lhn:A, 1lho:A, 1lhu:A, 1lhv:A, 1lhw:A, 6pya:A, 6pyb:A, 6pyf:A, 6ulb:A
21 6hwj:A 428 40 0.0420 0.0397 0.4250 8.5 6hwj:B, 6hwk:A, 6hwk:C, 6hwk:D, 6hwl:B
22 4ine:A 431 60 0.0444 0.0418 0.3000 9.4 4ine:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218