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BioLiP
>protein
ATPLTSLGSERAMFHGKHQPGITTPMQARGHLVAFDLAAGAGRKEAAALLRRWSDTARRLMAGEPAGSRDTDVARDAGPS
SLTVTFGFGHSFFGRTGLEEQRPVALDPLPDFSSDHLDKNRSNGDLWVQIGADDALVAFHALRAIQRDAGAAARVRWQMN
GFNRSPGATAHPMTARNLMGQVDGTRNPKPGEADFDRRIFVPEEGPAWMANGSYVVVRRIRMLLDDWEELSLKAQEDVIG
RRKSDGAPLSGGSGATESTEMDLEKTDGSGELVVPINAHARITRPDQNGGAAMVRRPFSYHDGFDADGVPDAGLLFVCWQ
ADPLRGFVPVQRKLDRGDALSQFIRHEASGLFAVPGGAAEGEYVGQRLLEG

The query sequence (length=371) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gt2:A 371 371 1.0000 1.0000 1.0000 0.0 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
2 8fjq:B 361 365 0.4555 0.4681 0.4630 7.79e-96 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
3 8ck9:A 374 363 0.4555 0.4519 0.4656 2.85e-89
4 5fw4:A 368 364 0.4474 0.4511 0.4560 2.00e-86 5fw4:B
5 8rgs:A 366 362 0.4367 0.4426 0.4475 2.21e-84 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
6 4gs1:B 376 364 0.4340 0.4282 0.4423 8.19e-82 4gs1:A
7 6qzo:A 361 359 0.4178 0.4294 0.4318 4.68e-78 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
8 7dlk:A 363 373 0.3801 0.3884 0.3780 9.66e-75 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
9 2y4e:A 384 378 0.3423 0.3307 0.3360 4.21e-52 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
10 6jbn:A 391 389 0.3450 0.3274 0.3290 6.98e-49 6jbn:B
11 5de0:B 298 234 0.1671 0.2081 0.2650 2.08e-12 5de0:A, 5de0:C, 5de0:D
12 3qns:A 311 169 0.1402 0.1672 0.3077 6.61e-11 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
13 4gu7:A 310 149 0.1348 0.1613 0.3356 1.66e-10 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
14 7ylo:A 311 142 0.1159 0.1383 0.3028 3.42e-09 7ylo:B
15 7yzt:A 306 148 0.1240 0.1503 0.3108 7.02e-09 7yzt:B, 7yzt:C
16 2iiz:A 306 220 0.1536 0.1863 0.2591 8.41e-09
17 8u4z:A 313 120 0.1024 0.1214 0.3167 2.52e-07
18 7bok:A 309 148 0.1186 0.1424 0.2973 9.85e-07 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
19 5vj0:D 300 152 0.1267 0.1567 0.3092 6.66e-05 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
20 6fiy:B 303 152 0.1267 0.1551 0.3092 5.74e-04 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
21 7o9j:B 307 200 0.1267 0.1531 0.2350 7.72e-04 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
22 4au9:A 448 202 0.1213 0.1004 0.2228 0.002 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A
23 4g2c:B 463 186 0.1321 0.1058 0.2634 0.091 4g2c:A
24 7anv:A 467 197 0.1294 0.1028 0.2437 0.18
25 5c2i:A 468 153 0.1024 0.0812 0.2484 0.43 5c2i:B, 5c2i:C, 5c2i:D
26 5h70:B 207 66 0.0512 0.0918 0.2879 1.2 5h70:A
27 7d8m:A 451 126 0.0728 0.0599 0.2143 2.1
28 4a2b:A 386 49 0.0431 0.0415 0.3265 3.3 4a2a:A, 4a2a:B, 1e4g:T
29 6rxu:UJ 1090 58 0.0458 0.0156 0.2931 5.1 5oql:G, 6rxt:UJ, 6rxv:UJ, 6rxy:UJ, 6rxz:UJ
30 3afv:A 439 160 0.1105 0.0934 0.2562 7.0 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
31 4zjp:A 270 47 0.0485 0.0667 0.3830 8.7
32 3h0g:M 1476 55 0.0485 0.0122 0.3273 9.1
33 4z61:A 610 40 0.0350 0.0213 0.3250 9.2 4z5w:B, 4z5w:A, 4z61:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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