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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSSDRGLCGAIHSSVAKQMIGVGDKIRSIKEVGR
RPPTFGDIFNRFRSVISYKTEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEI
ISGAAAL

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jj1:G 167 167 1.0000 1.0000 1.0000 3.09e-121 2jj1:N, 2jj2:G, 2jj2:N
2 2jiz:G 192 192 1.0000 0.8698 0.8698 6.58e-109 4asu:G, 2ck3:G, 2jdi:G, 2jiz:N, 4tt3:G, 4z1m:G
3 2w6i:G 263 263 1.0000 0.6350 0.6350 5.58e-97
4 1efr:G 122 167 0.7246 0.9918 0.7246 4.78e-73
5 3oeh:Y 201 201 0.4850 0.4030 0.4030 3.31e-42 3fks:Y, 2hld:Y, 3oe7:Y, 3oee:Y
6 3fks:P 235 238 0.4910 0.3489 0.3445 4.02e-31 7md2:G, 7md3:G
7 5hkk:G 284 61 0.2096 0.1232 0.5738 5.62e-16 5hkk:O
8 5hkk:G 284 43 0.1317 0.0775 0.5116 1.48e-06 5hkk:O
9 8ap6:G1 300 54 0.1257 0.0700 0.3889 1.70e-04 8ap6:G2, 8ap9:G, 8apa:G1, 8apc:G1, 8apf:G1
10 8ap6:G1 300 100 0.1437 0.0800 0.2400 5.0 8ap6:G2, 8ap9:G, 8apa:G1, 8apc:G1, 8apf:G1
11 7nkb:G 251 82 0.1317 0.0876 0.2683 0.079 7nkk:G, 7nkn:G
12 1e8w:A 851 31 0.0719 0.0141 0.3871 3.4 2a5u:A, 4anu:A, 4anw:A, 4anx:A, 4aof:A, 3apc:A, 3apd:A, 3apf:A, 6aud:A, 6c1s:A, 2chw:A, 2chx:A, 2chz:A, 3csf:A, 3cst:A, 3dbs:A, 4dk5:A, 3dpd:A, 1e7v:A, 1e8x:A, 1e8z:A, 1e90:A, 5eds:A, 3ene:A, 4ezj:A, 4ezk:A, 4ezl:A, 4f1s:A, 4fa6:A, 4fad:A, 4fjy:A, 4fjz:A, 4flh:A, 4ful:A, 4g11:A, 5g2n:A, 5g55:A, 4gb9:A, 4hle:A, 4j6i:A, 7jwz:A, 5kae:A, 7kke:A, 4kz0:A, 3l08:A, 3l13:A, 3l16:A, 3l17:A, 3l54:A, 3ml8:A, 3ml9:A, 3nzs:A, 3oaw:A, 5oq4:A, 3pre:A, 3prz:A, 3ps6:A, 4ps3:A, 4ps7:A, 4ps8:A, 3qaq:A, 3qar:A, 3r7q:A, 3r7r:A, 3s2a:A, 8sc8:A, 3t8m:A, 3tjp:A, 3tl5:A, 4urk:A, 2v4l:A, 4wwn:A, 6xrl:A, 4xx5:A, 4xz4:A, 7z61:A
13 1e7u:A 872 31 0.0719 0.0138 0.3871 3.4 4anv:A, 3ibe:A
14 5ifb:A 404 40 0.0898 0.0371 0.3750 4.5 6cfp:A, 5if8:A
15 2q1w:A 300 32 0.0778 0.0433 0.4062 4.7 2q1w:B, 2q1w:C
16 8xvg:L 3485 118 0.1257 0.0060 0.1780 5.3 8xvv:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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