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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATLEITDIALVQPSHQPLSNDQTLSLSHLDNDNNLHVSFRYLRVYSSSSESPSAVVSASLATALVHYYPLAGSLRRSASD
NRFELLCSAGQSVPLVNATVNCTLESGFVERLVPDPTREEGMVNPCILQVTMFQCGGWVLGASIHHAICDGLGASLFFNA
MAELARGATKISIEPVWDRERLLGPREKPWVGAPVRDFLSLDKDFDPYGQAIGDVKRDCFFVTDDSLDQLKAQLLEKSGL
NFTTFEALGAYIWRAKVRAAKTEEKENVKFVYSINIRRLMNPPLPKGYWGNGCVPMYAQIKAGELIEQPIWKTAELIKQS
KSNTSDEYVRSFIDFQELHHKDGINAGTGVTGFTDWRYLGHSTIDFGWGGPVTVLPLSNKLLGSMEPCFFLPYSTDAAAG
SKKDSGFKVLVNLRESAMPEFKEAMDKFHKGEFALS

The query sequence (length=436) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dqo:B 437 445 0.9817 0.9794 0.9618 0.0 8dqo:A, 8dqp:A, 8dqp:B, 8dqq:A, 8dqq:B, 8dqr:A
2 6lpw:B 436 444 0.3326 0.3326 0.3266 3.17e-63
3 5kjw:A 425 444 0.2936 0.3012 0.2883 5.36e-38 5kjw:B
4 5kjt:A 431 409 0.2569 0.2599 0.2738 8.46e-34 5kju:A
5 6lpv:A 434 405 0.2638 0.2650 0.2840 2.05e-31
6 5fal:A 435 394 0.2500 0.2506 0.2766 1.28e-30 5fan:A, 4kec:A
7 6mk2:A 407 441 0.2706 0.2899 0.2676 3.74e-26
8 8h8i:A 431 266 0.1606 0.1624 0.2632 2.22e-15 8hbt:A
9 6wao:A 431 335 0.1858 0.1879 0.2418 9.09e-15
10 2e1t:A 440 354 0.2133 0.2114 0.2627 1.77e-14 2e1t:B
11 6wao:B 406 332 0.1766 0.1897 0.2319 8.33e-13
12 7dex:A 460 388 0.2110 0.2000 0.2371 9.93e-13
13 2xr7:A 452 391 0.2294 0.2212 0.2558 1.21e-08
14 2zba:A 435 317 0.1537 0.1540 0.2114 0.033 2zba:B, 2zba:C
15 1cia:A 213 31 0.0252 0.0516 0.3548 0.76 1cla:A, 2cla:A, 3cla:A, 4cla:A, 1qca:A, 6x7q:A, 6x7q:B, 6x7q:C
16 3b2s:A 448 323 0.1583 0.1540 0.2136 1.2 3b30:A, 2rkv:A
17 4k08:A 144 40 0.0367 0.1111 0.4000 3.0
18 3f41:A 590 43 0.0252 0.0186 0.2558 3.3 3f41:B, 4wu3:A, 4wu3:B, 4wu3:C, 4wu3:D
19 5dua:A 445 47 0.0344 0.0337 0.3191 5.9 5du9:A, 5du9:B, 5dua:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218