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BioLiP
>protein
ATHEVHMLNKGESGAMVFEPAFVRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTP
HFGMGMVGLVQVGDAPENLDAAKTAKMPKKARERMDAELAQVN

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1adw:A 123 123 1.0000 1.0000 1.0000 4.05e-89 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
2 6akn:A 124 122 0.6667 0.6613 0.6721 3.29e-60 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
3 8k9n:A 125 117 0.5935 0.5840 0.6239 2.52e-55 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
4 1pmy:A 123 119 0.4634 0.4634 0.4790 2.12e-37
5 5b1j:C 124 123 0.4959 0.4919 0.4959 5.53e-37 3ef4:A, 3ef4:B, 3ef4:C
6 3tu6:A 127 121 0.4553 0.4409 0.4628 1.12e-34
7 1j5c:A 98 92 0.2764 0.3469 0.3696 2.59e-09 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
8 2plt:A 98 89 0.2358 0.2959 0.3258 6.29e-09 7zqe:M
9 1ag6:A 99 98 0.2683 0.3333 0.3367 3.04e-08 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
10 1iuz:A 98 84 0.2195 0.2755 0.3214 7.65e-08
11 1bxu:A 91 83 0.2276 0.3077 0.3373 1.93e-07 1bxv:A
12 4r0o:A 106 94 0.2439 0.2830 0.3191 1.23e-06 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
13 7pcy:A 98 84 0.2033 0.2551 0.2976 1.85e-06
14 1pla:A 97 89 0.2276 0.2887 0.3146 2.85e-06 1plb:A
15 1b3i:A 97 87 0.2520 0.3196 0.3563 5.65e-06 2b3i:A, 2jxm:A
16 9pcy:A 99 96 0.2520 0.3131 0.3229 7.71e-06
17 6yez:P 99 98 0.2358 0.2929 0.2959 1.05e-05 6zoo:P
18 1jxg:A 100 98 0.2195 0.2700 0.2755 1.33e-05 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
19 1byo:A 99 89 0.2358 0.2929 0.3258 2.11e-05 1byo:B, 1byp:A
20 4dp0:X 99 98 0.2276 0.2828 0.2857 3.24e-04 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
21 2gim:A 106 94 0.2276 0.2642 0.2979 4.15e-04 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
22 6kol:A 125 92 0.2195 0.2160 0.2935 5.14e-04 6l9s:A
23 1aac:A 105 68 0.1707 0.2000 0.3088 0.001 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
24 4kns:A 285 103 0.2520 0.1088 0.3010 0.024 4kns:B, 4kns:C, 4kns:D, 4kns:E, 4kns:F, 4knt:A, 4knt:B, 4knt:C, 4knu:A, 4knu:B, 4knu:C, 4knu:D, 4knu:E, 4knu:F
25 2bz7:A 102 46 0.1382 0.1667 0.3696 0.20 2bzc:A, 1kdi:A, 1kdj:A
26 3c75:A 106 45 0.1301 0.1509 0.3556 0.26 3c75:B, 1id2:A, 1id2:B, 1id2:C
27 8e9h:D 407 84 0.1707 0.0516 0.2500 0.30 8e9g:D
28 4djd:D 323 53 0.1138 0.0433 0.2642 0.58 4djd:F
29 5u93:B 161 85 0.1138 0.0870 0.1647 1.4 5u93:A, 5u9e:A, 5u9e:B
30 5nif:T 232 70 0.1545 0.0819 0.2714 1.8 5nif:F, 4x6z:T, 4x6z:F
31 3uva:C 405 42 0.1138 0.0346 0.3333 2.8 3uu0:A, 3uu0:B, 3uu0:C, 3uu0:D, 3uva:A, 3uva:B, 3uva:D, 3uxi:A
32 4ptv:A 445 56 0.1463 0.0404 0.3214 3.7 4ptv:B, 4ptw:A, 4ptw:B, 4ptx:A, 4ptx:B
33 7pu7:A 1070 34 0.1057 0.0121 0.3824 4.7 5lew:A
34 5b2o:A 1455 61 0.1545 0.0131 0.3115 4.7 5b2p:A, 5b2q:A
35 6v11:C 503 18 0.0894 0.0219 0.6111 7.0 6v11:A, 6v11:B, 6v11:F
36 6v11:E 464 18 0.0894 0.0237 0.6111 7.3
37 6on2:B 524 18 0.0894 0.0210 0.6111 7.3 6on2:C, 6on2:A, 6on2:D, 6on2:E, 6on2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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