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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ATGSVPLPERLLHHWPNGTWVENIAVRPNGNLLLTTSTPNGTVWHVKKPWTDTPEVELAYNFDEWVDRLIGIGETTPDKY
IVVGSRFYSPDAYSSHVDRTFAAMELDFTKEPPSTRMVAWMPEAELLQGVAALPWDRSIVLISDQYVLRPRYKQVDWTPS
PGQIWRLDTKTGDYELVMTDYAEMNTTYAHGPDVGINGIRILGNELYWVNQDNGGVYRVEIQKNGHPVPPAVPEVVSVVE
SQLWDDFAFGPGDEDLLWVTGLNAVYAVSKKNGTAVVVDGVGTSNNMSFPGPTSCQFGRTKHDSNVLYVTGNLYSVPDSL
LDVKIGGWVRAIDTTGFHLH

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7x36:A 340 340 1.0000 1.0000 1.0000 0.0 7x36:B, 7x36:C, 7x36:D
2 7x2n:A 340 341 0.6412 0.6412 0.6393 2.95e-161 7x2s:A, 7x2x:A
3 3n3t:B 261 55 0.0441 0.0575 0.2727 0.88 3n3t:A, 2r6o:A, 2r6o:B
4 6vft:C 420 39 0.0382 0.0310 0.3333 2.6 6vft:A, 6vft:B, 6vft:D
5 2yik:A 493 32 0.0382 0.0264 0.4062 3.0
6 6j6g:d 566 119 0.0735 0.0442 0.2101 3.3 7b9v:S, 6j6h:d, 6j6n:d, 6j6q:d, 5lqw:R
7 1iun:B 276 114 0.1000 0.1232 0.2982 3.7 2d0d:A, 1iuo:A, 1iup:A, 1uk7:A, 1uk8:A, 1uk9:A, 1uka:A
8 8ghh:A 276 68 0.0529 0.0652 0.2647 4.5 8ghi:A
9 4l8f:D 287 40 0.0412 0.0488 0.3500 6.4 4l8f:B, 4l8w:I, 4l8w:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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