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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATGGNLPDVASHYPVAYEQTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVVHEKGM
MAVGQSNHTSFFRPVKEGHVRAEAVRIHAGSTTWFWDVSLRDDAGRLCAVSSMSIAVRPRRD

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1q4s:A 142 142 1.0000 1.0000 1.0000 6.95e-104 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
2 4qd8:C 139 133 0.2887 0.2950 0.3083 8.56e-15 4qd8:E, 4qd8:F, 4qd8:D, 4qd9:C, 4qd9:D, 4qd9:F, 4qd9:E
3 5hmc:A 125 107 0.2817 0.3200 0.3738 9.78e-15
4 4m20:A 121 111 0.2254 0.2645 0.2883 9.78e-14 4m20:B, 4m20:D, 4m20:C
5 4k4c:A 137 120 0.2606 0.2701 0.3083 2.90e-12 4k4c:B, 4k4c:D, 4k4c:C, 4k4d:A, 4k4d:B
6 4k49:C 136 116 0.2465 0.2574 0.3017 1.28e-10 4k49:B, 4k49:D, 4k49:A, 4k4a:A, 4k4a:B, 4k4a:D, 4k4a:C, 4k4b:A, 4k4b:B, 4k4b:C, 4k4b:D, 4k4b:E, 4k4b:F, 4k4b:G, 4k4b:H
7 7ljm:A 348 52 0.1127 0.0460 0.3077 0.11 7ljm:B
8 5kc1:F 61 37 0.1056 0.2459 0.4054 0.33 5kc1:D, 5kc1:B, 5kc1:L, 5kc1:J
9 6c7n:D 389 55 0.1338 0.0488 0.3455 0.57
10 1wlv:A 117 112 0.2042 0.2479 0.2589 0.92 1wlv:C, 1wlv:D, 1wlv:B, 1wlv:E, 1wlv:F, 1wlv:G, 1wlv:H, 1wn3:A, 1wn3:C, 1wn3:D, 1wn3:B, 1wn3:E, 1wn3:G, 1wn3:H, 1wn3:F
11 6rxd:A 509 56 0.1197 0.0334 0.3036 3.7 6rxd:B, 6rxe:A, 6rxe:B, 6rxf:A, 6rxf:B, 6rxg:A, 6rxg:B
12 4tvm:A 380 31 0.0845 0.0316 0.3871 5.2
13 2zan:A 312 31 0.0775 0.0353 0.3548 7.3 7l9x:A, 2zao:A
14 7to3:C 357 52 0.0986 0.0392 0.2692 7.8 7d4j:A, 7d4o:A, 7d4o:B, 7d4s:A, 7d4u:A, 7ljl:A, 7ljl:B, 7to3:D, 7tqd:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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