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BioLiP
>protein
ATFQTDADFLLVGDDTSRYEEVMKTFDTVEAVRKSDLDDRVYMVCLKQGSTFVLNGGIEELRLLTGDSTLEIQPMIVPT

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2gj2:A 79 79 1.0000 1.0000 1.0000 1.88e-53 2gj2:D, 2gj2:B, 2gj2:C
2 3qry:B 426 59 0.2532 0.0469 0.3390 1.1 3qry:A, 3qsp:A, 3qsp:B
3 5lzw:jj 425 41 0.1772 0.0329 0.3415 1.5 5lzx:jj, 5lzy:jj, 5lzz:jj
4 5lr8:A 844 72 0.2658 0.0249 0.2917 2.3 5lr8:B, 5lra:A, 5lra:B, 5lrb:B, 5lrb:A
5 3wbm:A 86 37 0.1646 0.1512 0.3514 3.1 3wbm:B, 3wbm:C
6 2bon:A 287 27 0.1519 0.0418 0.4444 6.8
7 6pnl:A 336 49 0.1519 0.0357 0.2449 7.0 6pmh:A
8 5na8:A 651 35 0.1646 0.0200 0.3714 8.7 5na6:A, 5na7:A, 5na8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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