Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATFPPCARKMERADGPATVLAIGTANPPNVFDQSTYPDFYFNITNSNHMTDLKTKFQRMCDKSGITKRYMYLNEEILKAN
PNMCAYWEKSLDVRQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHVVFCTTSGVDMPGADWALTKLLGLRPSVKRLMMY
QQGCFAGGTVMRVAKDLAENNKGARVLVVCSELTAVTFRGPSETHLDSLVGQALFGDGASAIIVGADPIPEVERPWFEIH
YVASNILPDSDGAIDGHLREVGLTFHLMKDVPGIISKNIGTVLKDAFEKVFGVPSYNDVFWIAHPGGPAILDQVEQKLQL
KTEKMAASRQVLSDYGNMSSACVLFIMDHLRKKSVEQKLATSGEGYEWGLLLGFGPGLTCETVVLRSVPLA

The query sequence (length=391) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vf0:B 396 396 1.0000 0.9874 0.9874 0.0 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
2 7bur:B 389 383 0.7647 0.7686 0.7807 0.0 7bur:A, 8jrd:A, 8jrd:B
3 1chw:A 389 383 0.7494 0.7532 0.7650 0.0 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
4 7yj6:A 390 388 0.7673 0.7692 0.7732 0.0 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
5 8v8m:A 389 383 0.7110 0.7147 0.7258 0.0 8v8m:C
6 3awj:A 380 377 0.6726 0.6921 0.6976 0.0
7 1z1f:A 388 383 0.6854 0.6907 0.6997 0.0
8 3wd7:A 401 383 0.6573 0.6409 0.6710 0.0 7cct:A, 6l7j:A, 3wd7:B
9 6op5:A 383 381 0.6624 0.6762 0.6798 0.0 6op5:B
10 1xes:A 387 384 0.6317 0.6382 0.6432 0.0 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
11 6j1m:A 381 382 0.6189 0.6352 0.6335 0.0 6j1m:B, 6j1n:A, 6j1n:B
12 8b3c:B 383 383 0.6522 0.6658 0.6658 0.0 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
13 6gw3:A 383 380 0.6010 0.6136 0.6184 6.56e-177 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
14 1ee0:A 376 374 0.5985 0.6223 0.6257 9.28e-176 1ee0:B
15 5w8q:A 379 372 0.5652 0.5831 0.5941 1.42e-164 5w8q:B, 5wc4:A, 5wc4:B
16 2d3m:A 405 385 0.5627 0.5432 0.5714 2.43e-159 2d3m:B, 2d52:A, 2d52:B
17 5wx6:B 376 375 0.5448 0.5665 0.5680 2.40e-158 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
18 7f08:J 379 377 0.5217 0.5383 0.5411 7.07e-156 7f08:B, 7f08:D, 7f08:L
19 5wx3:C 353 375 0.5294 0.5864 0.5520 3.33e-150
20 4b0n:A 379 349 0.2583 0.2665 0.2894 4.97e-36 4b0n:B
21 4jap:C 353 367 0.2583 0.2861 0.2752 8.47e-33 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
22 7d41:A 367 333 0.2174 0.2316 0.2553 1.19e-30 7d41:B
23 3eut:A 379 299 0.2225 0.2296 0.2910 1.20e-26 3eut:C
24 3wy0:B 377 304 0.2353 0.2440 0.3026 1.43e-23 3wxy:A, 3wxy:B, 3wy0:A
25 6kvs:A 313 295 0.1893 0.2364 0.2508 2.11e-06 6kvs:B
26 3sqz:A 388 112 0.0793 0.0799 0.2768 9.09e-05
27 1mzj:A 334 334 0.2020 0.2365 0.2365 0.002 1mzj:B
28 8vda:A 311 130 0.0921 0.1158 0.2769 0.004
29 8d1u:A 318 134 0.0972 0.1195 0.2836 0.010 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
30 5bqs:A 323 86 0.0691 0.0836 0.3140 0.012 5bqs:B
31 2qnx:A 334 300 0.1662 0.1946 0.2167 0.051 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
32 1xpl:A 389 137 0.0921 0.0925 0.2628 0.073 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
33 3dea:B 189 62 0.0486 0.1005 0.3065 0.69 3dea:A
34 8oyf:A 310 52 0.0512 0.0645 0.3846 2.7 8oyg:A, 3zux:A, 3zuy:A
35 4nhd:D 318 276 0.1560 0.1918 0.2210 3.2 4nhd:A, 4nhd:B, 4nhd:C
36 5ijg:B 403 106 0.0742 0.0720 0.2736 4.1 5ijg:A
37 8hx9:A 632 71 0.0486 0.0301 0.2676 7.4
38 7zay:A 566 44 0.0358 0.0247 0.3182 7.6 7scj:A
39 7uqx:A 583 44 0.0358 0.0240 0.3182 8.3 7uqy:A
40 1dfx:A 125 84 0.0588 0.1840 0.2738 8.7
41 7sck:A 642 44 0.0358 0.0218 0.3182 8.9
42 9gbv:B 782 148 0.0767 0.0384 0.2027 9.4 1aj6:A, 7c7n:A, 7c7o:A, 7dor:A, 7dor:B, 7dpr:A, 7dpr:B, 7dps:A, 7dps:B, 7dqf:A, 7dqf:B, 7dqh:A, 7dqh:B, 7dqi:A, 7dqi:B, 7dqj:A, 7dqj:B, 7dql:A, 7dql:B, 7dqm:A, 7dqm:B, 7dqs:A, 7dqs:B, 7dqu:A, 7dqu:B, 7dqw:A, 7dqw:B, 4duh:A, 4duh:B, 1ei1:A, 1ei1:B, 6eng:A, 6eng:B, 6f86:A, 6f8j:A, 6f94:A, 6f96:A, 3g7e:A, 9gbv:D, 9ggq:D, 9ggq:B, 4hyp:A, 4hyp:B, 4hyp:C, 4hyp:D, 6j90:A, 4kfg:A, 4kfg:B, 1kzn:A, 6kzv:A, 6kzx:A, 6kzz:A, 6l01:A, 5l3j:A, 5mmn:A, 5mmo:A, 5mmp:A, 7p2m:A, 7p2n:A, 7p2w:A, 7p2x:A, 4prv:A, 4prx:A, 4pu9:A, 8qdx:B, 8qdx:D, 8qqi:D, 8qqi:B, 8qqs:B, 8qqs:D, 8qqu:D, 6rku:D, 6rku:B, 6rkv:D, 6rkv:B, 6rkw:D, 6rkw:B, 4wub:A, 4wuc:A, 4wud:A, 4xtj:A, 6yd9:A, 5z4h:A, 5z4h:B, 5z4o:A, 5z4o:B, 5z9b:A, 5z9b:B, 5z9e:A, 5z9e:B, 5z9f:A, 5z9f:B, 5z9l:A, 5z9l:B, 5z9m:A, 5z9m:B, 5z9n:A, 5z9q:A, 5z9q:B, 7z9c:D, 7z9c:B, 7z9g:D, 7z9g:B, 7z9k:B, 7z9k:D, 7z9m:B, 7z9m:D, 4zvi:A, 5zxm:A, 5zxm:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218