Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATFPPCARKMERADGPATVLAIGTANPPNVFDQSTYPDFYFNITNSNHMTDLKTKFQRMCDKSGITKRYMYLNEEILKAN
PNMCAYWEKSLDVRQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHVVFCTTSGVDMPGADWALTKLLGLRPSVKRLMMY
QQGCFAGGTVMRVAKDLAENNKGARVLVVCSELTAVTFRGPSETHLDSLVGQALFGDGASAIIVGADPIPEVERPWFEIH
YVASNILPDSDGAIDGHLREVGLTFHLMKDVPGIISKNIGTVLKDAFEKVFGNEEGEVPSYNDVFWIAHPGGPAILDQVE
QKLQLKTEKMAASRQVLSDYGNMSSACVLFIMDHLRKKSVEQKLATSGEGYEWGLLLGFGPGLTCETVVLRSVPLA

The query sequence (length=396) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vf0:B 396 396 1.0000 1.0000 1.0000 0.0 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
2 7bur:B 389 388 0.7525 0.7661 0.7680 0.0 7bur:A, 8jrd:A, 8jrd:B
3 7yj6:A 390 388 0.7576 0.7692 0.7732 0.0 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
4 1chw:A 389 388 0.7374 0.7506 0.7526 0.0 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
5 8v8m:A 389 388 0.6995 0.7121 0.7139 0.0 8v8m:C
6 3awj:A 380 382 0.6641 0.6921 0.6885 0.0
7 1z1f:A 388 388 0.6742 0.6881 0.6881 0.0
8 3wd7:A 401 388 0.6465 0.6384 0.6598 0.0 7cct:A, 6l7j:A, 3wd7:B
9 6op5:A 383 386 0.6515 0.6736 0.6684 0.0 6op5:B
10 1xes:A 387 389 0.6212 0.6357 0.6324 0.0 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
11 6j1m:A 381 387 0.6086 0.6325 0.6227 0.0 6j1m:B, 6j1n:A, 6j1n:B
12 8b3c:B 383 388 0.6414 0.6632 0.6546 0.0 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
13 6gw3:A 383 385 0.5909 0.6110 0.6078 7.83e-175 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
14 1ee0:A 376 379 0.5884 0.6197 0.6148 9.50e-174 1ee0:B
15 5w8q:A 379 376 0.5581 0.5831 0.5878 7.97e-165 5w8q:B, 5wc4:A, 5wc4:B
16 2d3m:A 405 390 0.5581 0.5457 0.5667 4.12e-158 2d3m:B, 2d52:A, 2d52:B
17 5wx6:B 376 380 0.5379 0.5665 0.5605 1.68e-156 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
18 7f08:J 379 382 0.5152 0.5383 0.5340 2.41e-154 7f08:B, 7f08:D, 7f08:L
19 5wx3:C 353 380 0.5227 0.5864 0.5447 3.05e-149
20 4b0n:A 379 354 0.2576 0.2691 0.2881 8.73e-35 4b0n:B
21 4jap:C 353 371 0.2551 0.2861 0.2722 3.51e-32 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
22 7d41:A 367 338 0.2146 0.2316 0.2515 1.63e-29 7d41:B
23 3eut:A 379 300 0.2197 0.2296 0.2900 5.60e-27 3eut:C
24 3wy0:B 377 308 0.2323 0.2440 0.2987 2.12e-23 3wxy:A, 3wxy:B, 3wy0:A
25 6kvs:A 313 303 0.1970 0.2492 0.2574 4.29e-07 6kvs:B
26 3sqz:A 388 112 0.0783 0.0799 0.2768 9.12e-05
27 8d1u:A 318 134 0.0960 0.1195 0.2836 0.009 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
28 5bqs:A 323 86 0.0682 0.0836 0.3140 0.011 5bqs:B
29 1mzj:A 334 339 0.2020 0.2395 0.2360 0.021 1mzj:B
30 3il5:A 320 180 0.0985 0.1219 0.2167 0.027 3il4:A, 3il4:B, 3il4:C, 3il4:D, 3il5:B, 3il5:C, 3il5:D, 3il6:A
31 8vda:A 311 136 0.0960 0.1222 0.2794 0.046
32 1xpl:A 389 137 0.0909 0.0925 0.2628 0.066 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
33 2qnx:A 334 305 0.1667 0.1976 0.2164 0.30 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
34 3ug7:A 317 72 0.0455 0.0568 0.2500 1.8 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
35 8oyf:A 310 52 0.0505 0.0645 0.3846 2.8 8oyg:A, 3zux:A, 3zuy:A
36 7sbb:I 680 96 0.0606 0.0353 0.2500 3.2
37 5ijg:B 403 106 0.0732 0.0720 0.2736 4.1 5ijg:A
38 3dea:B 189 67 0.0480 0.1005 0.2836 5.2 3dea:A
39 3h77:B 338 345 0.1894 0.2219 0.2174 5.8 3h77:A, 3h78:A, 3h78:B
40 4nhd:D 318 281 0.1540 0.1918 0.2171 8.4 4nhd:A, 4nhd:B, 4nhd:C
41 1dfx:A 125 84 0.0581 0.1840 0.2738 9.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218