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BioLiP
>protein
ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCV
AYPTSDVVIQTHKEEDLY

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1czp:A 98 98 0.9898 0.9898 0.9898 3.16e-68 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
2 1rfk:B 97 97 0.8469 0.8557 0.8557 1.16e-57 3p63:A, 3p63:B, 1rfk:A
3 3b2g:A 98 97 0.8163 0.8163 0.8247 1.04e-55 3b2g:B
4 7s3d:X 97 97 0.7755 0.7835 0.7835 3.80e-53 7s3d:W, 7s3d:x
5 4fxc:A 98 98 0.7755 0.7755 0.7755 4.28e-52
6 6xtf:D 96 98 0.7449 0.7604 0.7449 1.35e-49 6xtf:C
7 3ab5:A 97 96 0.6939 0.7010 0.7083 6.70e-48 3ab5:B, 3wcq:A
8 7y5e:NN 99 98 0.7245 0.7172 0.7245 2.33e-47 7y5e:N2, 7y7a:N7, 7y7a:No
9 6khi:1 98 98 0.7245 0.7245 0.7245 3.70e-47 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
10 5auk:A 96 98 0.7347 0.7500 0.7347 4.59e-46 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
11 3av8:A 97 99 0.7449 0.7526 0.7374 1.05e-45 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
12 6yac:N 97 97 0.7041 0.7113 0.7113 1.40e-43 6yez:N
13 5h57:A 97 98 0.6837 0.6907 0.6837 2.32e-43 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
14 1gaq:B 98 97 0.6939 0.6939 0.7010 1.29e-42 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
15 4zho:A 97 95 0.6735 0.6804 0.6947 1.97e-41 4zho:B
16 1a70:A 97 97 0.6224 0.6289 0.6289 4.53e-41
17 1pfd:A 96 97 0.6327 0.6458 0.6392 1.32e-40
18 7akt:A 107 96 0.6633 0.6075 0.6771 4.85e-40 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
19 6iri:A 107 95 0.5918 0.5421 0.6105 4.91e-40
20 1awd:A 94 96 0.6531 0.6809 0.6667 5.95e-40
21 4zhp:A 98 97 0.6429 0.6429 0.6495 8.72e-40
22 1frr:A 95 81 0.5612 0.5789 0.6790 2.94e-38 1frr:B
23 4itk:A 104 95 0.6122 0.5769 0.6316 2.39e-36
24 1iue:A 98 99 0.5408 0.5408 0.5354 2.56e-33 1iue:B
25 1wri:A 93 95 0.5612 0.5914 0.5789 4.30e-31
26 6vjv:A 96 96 0.4796 0.4896 0.4896 3.67e-30 6vjv:B
27 4n58:A 266 97 0.5306 0.1955 0.5361 2.07e-27 4n58:B, 4n59:A, 4n59:B
28 8jc1:A 267 81 0.5000 0.1835 0.6049 3.29e-27 8jc1:B, 8jc1:C, 8jc1:D
29 1frd:A 98 94 0.4898 0.4898 0.5106 2.34e-24
30 1e0z:A 128 72 0.3878 0.2969 0.5278 2.07e-19 1e10:A
31 1doi:A 128 72 0.3878 0.2969 0.5278 2.07e-19
32 1krh:A 337 90 0.2959 0.0861 0.3222 4.86e-10 1krh:B
33 1jq4:A 98 88 0.3163 0.3163 0.3523 1.77e-06
34 3zyy:X 628 77 0.2245 0.0350 0.2857 2.11e-06 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
35 2pia:A 321 67 0.2041 0.0623 0.2985 4.64e-06
36 5ogx:A 333 70 0.2143 0.0631 0.3000 3.16e-05
37 7ylr:A 326 62 0.1837 0.0552 0.2903 4.47e-05
38 6laa:A 753 87 0.2143 0.0279 0.2414 3.63e-04 6gii:A, 6ldl:A
39 4wqm:A 326 77 0.2143 0.0644 0.2727 3.63e-04
40 6icm:D 87 81 0.2143 0.2414 0.2593 0.003
41 7c3b:B 306 75 0.2347 0.0752 0.3067 0.003
42 7c3b:C 334 75 0.2347 0.0689 0.3067 0.004 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
43 5frt:E 105 53 0.1735 0.1619 0.3208 0.020 5ffi:E
44 5frt:A 119 53 0.1735 0.1429 0.3208 0.024 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
45 6kbh:A 765 69 0.1633 0.0209 0.2319 0.031
46 4hea:3 756 38 0.1429 0.0185 0.3684 0.090 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
47 7q5y:A 626 39 0.1531 0.0240 0.3846 0.44 7q5y:G, 7q5y:M, 7q5y:S
48 7awt:G 907 80 0.2449 0.0265 0.3000 0.64 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
49 8e9h:G 782 40 0.1531 0.0192 0.3750 0.83 8e9g:G, 8e9i:G
50 1e9m:A 106 75 0.2245 0.2075 0.2933 1.0 1uwm:A
51 7d6v:B 239 61 0.1633 0.0669 0.2623 2.3 7d6x:B
52 8a5e:A 583 40 0.1429 0.0240 0.3500 3.7 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
53 2avn:A 247 63 0.1735 0.0688 0.2698 4.9 2avn:B
54 2bs2:B 239 50 0.1531 0.0628 0.3000 4.9 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
55 6rm3:SBB 82 19 0.0816 0.0976 0.4211 5.3
56 7y8r:I 732 25 0.1224 0.0164 0.4800 6.4
57 8oh5:C 1172 40 0.1429 0.0119 0.3500 7.4 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
58 8ux2:B 240 23 0.1224 0.0500 0.5217 8.8 8hte:A, 8htf:A, 8ux2:A, 8ux2:C
59 2gke:A 274 46 0.1224 0.0438 0.2609 9.7 2gkj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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