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BioLiP
>protein
ATFGMGDRVRKKSGAAWQGQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALERI

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ny0:A 58 56 1.0000 0.9655 1.0000 1.18e-37 6nxz:A, 2p4t:A, 2rk1:A, 2rk2:A
2 4mc5:C 497 34 0.2500 0.0282 0.4118 0.49 8gv7:A, 4k3x:B, 4k3x:D, 4k3x:F, 4mc5:A, 4mc5:B, 7wvg:A
3 7s5o:C 160 40 0.2321 0.0813 0.3250 0.68 7s5o:A, 7s5o:B
4 6ntf:A 491 29 0.1964 0.0224 0.3793 0.72 5ajm:A, 4bgx:A, 4bgy:A, 4bh0:A, 4bh0:C, 4bh0:E, 4bh1:A, 4bh1:C, 4bh1:E, 4bh3:A, 4bh4:A, 6cf5:A, 6cf5:C, 6cf5:E, 6cfg:A, 4cqq:A, 4cqr:A, 4cqu:A, 4cqw:A, 4cqw:C, 4cqw:E, 4cqx:A, 4cqx:C, 4cqx:E, 4cqy:A, 4cqy:C, 4cqy:E, 4cqz:A, 5e2z:C, 5e2z:A, 5e2z:E, 5e30:C, 5e30:A, 5e30:E, 6e7h:C, 2fk0:Q, 1jsn:A, 1jso:A, 4k63:A, 4k63:C, 4k63:E, 4k63:G, 4k64:A, 4k64:C, 4k66:A, 4k66:C, 4k67:A, 4k67:C, 4k67:E, 4k67:G, 4kdn:A, 4kdn:C, 4kdo:C, 4kdo:A, 4n5z:A, 6p3s:U, 6p3s:H, 6vmz:A, 6vmz:C, 6vmz:E, 8zdw:H, 8zdw:C, 8zdw:A, 3znk:A, 3znk:C, 3znk:E, 3znl:A, 3znl:C, 3znl:E, 3znm:A, 3znm:C, 3znm:E, 3zp0:E, 3zp1:E, 3zp2:E, 3zp3:E, 3zp6:E, 3zpb:E
5 6iig:A 495 34 0.2143 0.0242 0.3529 0.72 6cfg:B, 6ijt:A, 6in5:A, 6vmz:B, 6vmz:D, 6vmz:F, 5z88:A
6 2wr1:B 490 29 0.1964 0.0224 0.3793 1.2 2wr1:C, 2wr2:B, 2wr2:C, 2wr3:A, 2wr4:A, 2wr7:A, 2wrb:A, 2wre:A, 2wre:B, 2wre:C, 2wrf:F, 2wrf:D
7 7li0:A 312 47 0.1964 0.0353 0.2340 2.5 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
8 2rjb:A 418 24 0.1786 0.0239 0.4167 3.4 2rjb:B, 2rjb:C
9 2r1b:A 198 31 0.1964 0.0556 0.3548 5.0 2r1b:B
10 5l58:A 376 32 0.1964 0.0293 0.3438 6.4
11 3poy:A 1005 31 0.1964 0.0109 0.3548 8.2 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
12 2bz8:B 57 29 0.1964 0.1930 0.3793 8.7 2bz8:A
13 8gxv:A 353 24 0.1607 0.0255 0.3750 9.4
14 1mqq:A 675 28 0.1607 0.0133 0.3214 9.7 1k9e:A, 1k9f:A, 1l8n:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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