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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATFGAWDYGVFATMLLVSTGIGLWVGLALAAVPVGLSLAASFMSAVQVLGVPAEAARYGLKFLWMCAGQLLNSLLTAFLF
LPIFYRLGLTSTYQYLELRFSRAVRLCGTLQYLVATMLYTGIVIYAPALILNQVTGLDIWASLLSTGIICTLYTTVGGWT
DVFQVVVMLVGFWVILARGVILLGGPRNVLSLAQQHSRINLMDFDPDPRSRYTFWTFIVGGTLVWLSMYGVNQAQVQRYV
ACHTEGKAKLALLVNQLGLFLIVASAACCGIVMFVYYKDCDPLLTGRISAPDQYMPLLVLDIFEDLPGVPGLFLACAYSG
TLSTASTSINAMAAVTVEDLIKPRMPGLAPRKLVFISKGLSFIYGSACLTVAALSSLLGGGVLQGSFTVMGVISGPLLGA
FTLGMLLPACNTPGVLSGLAAGLAVSLWVAVGATLYPPGEQTMGVLPTSAAGPALADTFYAISYLYYGALGTLTTMLCGA
LISYLTGPTKRSSLGPGLLWW

The query sequence (length=501) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uuz:A 501 501 1.0000 1.0000 1.0000 0.0 7uv0:A
2 7sl9:A 497 492 0.5090 0.5131 0.5183 2.63e-179
3 5nv9:A 480 491 0.2176 0.2271 0.2220 1.92e-17 5nva:A
4 3dh4:A 512 422 0.1956 0.1914 0.2322 6.30e-14 3dh4:B, 3dh4:C, 3dh4:D
5 8hg7:A 590 548 0.2435 0.2068 0.2226 5.91e-12 8hb0:A, 8hdh:A, 8hez:A, 8hin:A, 7vsi:A, 7ynj:A, 7ynk:A
6 7sla:A 585 395 0.1756 0.1504 0.2228 2.34e-11 7sl8:A
7 7wmv:A 602 467 0.1956 0.1628 0.2099 1.15e-08
8 7yni:A 566 447 0.1876 0.1661 0.2103 1.35e-08
9 8j74:A 515 67 0.0399 0.0388 0.2985 0.098 8j74:B, 8j75:A, 8j77:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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