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BioLiP
>protein
ATEGYPFVPPDWAPALFVPLTGLVLPAVGMAWAFTYIQK

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sl5:I 39 39 1.0000 1.0000 1.0000 1.88e-22
2 7dz7:I 42 39 0.7179 0.6667 0.7179 2.76e-15 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
3 6igz:I 32 28 0.4359 0.5312 0.6071 7.08e-07
4 7yca:I 35 26 0.4359 0.4857 0.6538 4.91e-06
5 7wfd:AI 33 29 0.4103 0.4848 0.5517 5.31e-06 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
6 7a4p:I 35 29 0.4103 0.4571 0.5517 1.30e-05 6zzx:I, 6zzy:I
7 8htu:I 34 29 0.3846 0.4412 0.5172 1.50e-05 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
8 8bcv:I 33 26 0.3846 0.4545 0.5769 1.52e-05 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
9 6ly5:i 33 26 0.3846 0.4545 0.5769 4.05e-05 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
10 7qco:I 39 29 0.3333 0.3333 0.4483 9.34e-05 7qco:P, 7qco:p, 7qco:i
11 6kif:I 38 28 0.4103 0.4211 0.5714 1.38e-04 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
12 7dr0:I 30 25 0.3333 0.4333 0.5200 3.09e-04 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
13 7y5e:IN 31 28 0.3333 0.4194 0.4643 3.61e-04 7y5e:I2, 7y7a:I7, 7y7a:Io
14 8wm6:I 34 28 0.3077 0.3529 0.4286 3.82e-04 8wmj:I, 8wmv:I, 8wmw:I
15 6l4u:I 35 28 0.3333 0.3714 0.4643 6.02e-04
16 7y7b:I 33 28 0.3077 0.3636 0.4286 0.001 7y8a:I
17 6vpv:I 38 29 0.3333 0.3421 0.4483 0.041 6vpv:i, 6vpv:7
18 8wey:I 32 29 0.3077 0.3750 0.4138 0.046 7blz:I, 5zgb:I, 5zgh:I
19 8eqm:D 338 30 0.3590 0.0414 0.4667 0.64 8eqm:d, 7sa3:D
20 6k61:I 34 26 0.2308 0.2647 0.3462 1.2 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
21 6kmw:aI 38 29 0.2821 0.2895 0.3793 1.5 6kmw:cI, 6kmw:bI
22 7d41:A 367 28 0.2564 0.0272 0.3571 1.8 7d41:B
23 8jjr:i 120 16 0.2821 0.0917 0.6875 2.7
24 8jze:i 119 16 0.2821 0.0924 0.6875 2.9 8jzf:i
25 8h6l:2D 236 22 0.2564 0.0424 0.4545 3.1 8h6k:2D, 8q7n:7, 8qoz:7, 8qpa:7, 8qpb:7, 8qpe:7, 8qzs:7, 8r09:7, 8r0b:7, 8rm5:7
26 8vzl:A 646 23 0.2564 0.0155 0.4348 4.4 9bs3:A, 9bs3:E, 9bs4:A, 9bs4:E, 7kr3:A, 7kr4:A, 7l34:A, 7l35:A, 6p09:A, 6p0a:A, 6p0b:A, 6p0c:A, 6p0d:A, 6p0e:A, 6q1v:A, 7qnz:A, 7qo1:A, 7sum:A, 7sx5:A, 7sxe:A, 8vdn:A, 8vds:A, 8vdt:A, 8vzm:A, 1x9n:A
27 6dli:A 256 28 0.3077 0.0469 0.4286 4.6 6dli:B, 6dli:C, 6dli:D, 5w16:A, 5w16:B, 5w16:C, 5w16:D
28 5ltv:D 226 29 0.2821 0.0487 0.3793 4.8 5ltv:A, 5ltv:B, 5ltv:E
29 8am5:i 40 29 0.2308 0.2250 0.3103 5.0 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
30 5f7v:A 388 25 0.2821 0.0284 0.4400 5.1
31 8jfk:B 1033 18 0.2821 0.0106 0.6111 7.2 8jfk:N, 8jfk:J, 8jfk:F, 8jfl:B, 8jfl:N, 8jfl:F, 8jfl:J, 8xya:B
32 1kb0:A 670 23 0.3077 0.0179 0.5217 8.6
33 7cfn:R 274 19 0.2821 0.0401 0.5789 9.0 7cfm:R, 7xtq:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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