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BioLiP
>protein
ATDFNRGIMKFDGADSPAMIAISAVLILGFIAGLIWWALHTAYA

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6l7o:Q 44 44 1.0000 1.0000 1.0000 3.98e-26 6l7p:Q
2 8a6t:A 571 30 0.2727 0.0210 0.4000 3.4 8a6t:D, 8bew:A, 8bew:D
3 3suc:A 767 33 0.2500 0.0143 0.3333 5.2 3gq7:A, 3gq8:A, 3gqa:A, 3gqk:A
4 1q2l:A 937 15 0.1818 0.0085 0.5333 6.1
5 3p3i:A 135 30 0.2500 0.0815 0.3667 6.7 3kuv:B, 3kuv:A, 3kuw:B, 3kuw:A, 3kv7:B, 3kv7:A, 3kv8:A, 3kv8:B, 3kvi:B, 3kvi:A, 3kvu:A, 3kvu:B, 3kvu:C, 3kvu:D, 3kvz:A, 3kvz:B, 3kvz:E, 3kvz:F, 3kw1:C, 3kw1:D, 3kw1:E, 3kw1:F, 3p2r:A, 3p2r:B, 3p3i:B, 3p3i:C, 3p3i:D
6 8wew:A 233 34 0.2955 0.0558 0.3824 9.4 8wew:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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