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BioLiP
>protein
ATCYCRTGRCATRESLSGVCEISGRLYRLCCR

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5cuj:A 32 32 0.9688 0.9688 0.9688 4.72e-15 5cuj:E, 5cuj:F, 5cuj:B, 5cuj:C, 5cuj:D, 5cum:A, 5cum:B, 5cum:C, 1zmp:B
2 3lo1:A 30 30 0.4062 0.4333 0.4333 0.020
3 4lbf:A 30 30 0.3750 0.4000 0.4000 0.14 4lbf:F, 4lbf:G, 4lbf:H
4 6ah4:B 357 18 0.2812 0.0252 0.5000 4.9 6ah4:C, 6ah4:A, 6ah5:C, 6ah5:A, 6ah5:B, 9ik1:A, 9ik1:B, 9ik1:C, 5svk:A, 5svk:B, 5svl:A, 5svl:B, 5svm:A, 5svm:B, 5svp:A, 5svp:B, 5svq:A, 5svr:A, 5yve:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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