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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATCELALENKSLPGTVHAYVTGHEQGTDRWVLLRPDGSVYRPDSPGAPQTPLPVDCAIPLKGAGAGPVVMTLPQMYGARV
YFVRDDKLDFYLNPGPSLVEPAFATPTDPNYGRTWSFCEFTFNPQQLYANISYVDLVTALPIGLTLEGDSTHTVAPLPDG
AVQRIADDLTAQAASDGQPWDKLVTRGSDGQVLRVVSPQNLMAPFFDRPDQMPFRDLFTAQIDEVWEKYRSTDLRIDLQG
GRGTLSGRVSGDTLTFEGGHTFVKPTSKDIFTCNHGPFANDPADSDDKKALLARIAAGFNRSIMLSHPQQPNGTTVADYY
KGGVTNHWSRVVHANSPIGYAFPYDDVRPDGEPDVSGAAHDGNPRRFTVSVGS

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vtl:A 373 373 1.0000 1.0000 1.0000 0.0 7vtm:A
2 3gd9:A 362 382 0.3110 0.3204 0.3037 5.43e-37
3 1reo:A 484 43 0.0456 0.0351 0.3953 0.41 1tdk:A, 1tdn:A, 1tdo:A
4 8any:W 116 37 0.0375 0.1207 0.3784 3.1 7a5f:W3, 7a5g:W3, 7a5h:W, 7a5i:W3, 7a5j:W, 7a5k:W3, 6i9r:W, 3j7y:W, 3j9m:W, 8k2a:La, 8k2b:La, 7l08:W, 7l20:W, 6nu2:W, 6nu3:W, 7o9k:W, 7o9m:W, 7odr:W, 7ods:W, 7odt:W, 7of0:W, 7of2:W, 7of3:W, 7of4:W, 7of5:W, 7of6:W, 7of7:W, 7og4:XW, 7oi6:W, 7oi7:W, 7oi8:W, 7oi9:W, 7oia:W, 7oib:W, 7oic:W, 7oid:W, 7oie:W, 8oir:BD, 8oit:BD, 5ool:W, 5oom:W, 7pd3:W, 8pk0:W, 7po4:W, 7qh6:W, 7qh7:W, 7qi4:W, 7qi5:W, 7qi6:W, 8qsj:W, 8qu1:W, 8qu5:W, 6vlz:W, 6vmi:W, 8xt0:La, 8xt1:La, 8xt2:La, 8xt3:La, 6zm5:W, 6zm6:W, 6zs9:XW, 6zsa:XW, 6zsb:XW, 6zsc:XW, 6zsd:XW, 6zse:XW, 6zsg:XW
5 5aj4:B0 114 38 0.0402 0.1316 0.3947 3.3 6gaw:B0, 6gb2:B0, 7nqh:B0, 7nql:B0, 7nsh:B0, 7nsi:B0, 7nsj:B0, 8oin:BD, 8oiq:BD, 4v19:0, 6ydp:B0, 6ydw:B0
6 6g5q:B 381 28 0.0295 0.0289 0.3929 4.8 6g5o:A, 6g5o:B, 6g5q:A
7 3dty:A 374 61 0.0483 0.0481 0.2951 5.5 3dty:E
8 1suw:A 249 57 0.0429 0.0643 0.2807 5.8 1suw:D, 1suw:B, 1suw:C, 1z0s:A, 1z0s:D, 1z0s:B, 1z0s:C, 1z0u:A, 1z0u:B, 1z0z:A, 1z0z:D, 1z0z:B, 1z0z:C
9 7lhz:B 631 128 0.0751 0.0444 0.2188 9.0
10 5ch9:A 328 26 0.0295 0.0335 0.4231 10.0 5ch9:B, 3f4c:A, 3f4c:B, 3f4d:A, 3f4d:B, 4h9t:A, 4h9t:B, 4h9u:A, 4h9u:B, 4h9v:A, 4h9v:B, 4h9x:A, 4h9x:B, 4h9y:A, 4h9y:B, 4h9z:A, 4h9z:B, 4ha0:A, 4ha0:B, 6jss:A, 6jss:B, 6jss:C, 6jss:D, 6jst:A, 6jst:B, 6jst:C, 6jst:D, 6jsu:A, 6jsu:B, 3ojg:A, 3orw:A, 3orw:B, 3tn3:A, 3tn3:B, 3tn4:A, 3tn4:B, 3tn5:A, 3tn5:B, 3tn6:A, 3tn6:B, 3tnb:A, 3tnb:B, 4wvx:A, 4wvx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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