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BioLiP
>protein
ASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETANIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIES
AL

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kcp:B 84 82 1.0000 0.9762 1.0000 3.63e-56 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
2 5xsk:A 90 85 0.5244 0.4778 0.5059 3.15e-19
3 6iit:B 100 84 0.4634 0.3800 0.4524 3.27e-16 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
4 8cbn:L 86 80 0.4024 0.3837 0.4125 9.83e-16 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
5 3qj6:A 90 84 0.4512 0.4111 0.4405 3.49e-15 3qby:B
6 9exy:B 135 96 0.3537 0.2148 0.3021 1.64e-05 6ue6:C, 6ue6:F
7 9exw:A 148 49 0.2439 0.1351 0.4082 6.56e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
8 4n4g:A 209 74 0.2927 0.1148 0.3243 5.17e-04 4n4h:A, 4n4i:A, 4ns5:A
9 5ciu:B 121 65 0.2073 0.1405 0.2615 0.002
10 5nrr:B 137 65 0.2073 0.1241 0.2615 0.003 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
11 6g2b:A 123 68 0.2439 0.1626 0.2941 0.012 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
12 5b73:A 313 72 0.2439 0.0639 0.2778 0.012 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
13 7q3e:D 226 34 0.1341 0.0487 0.3235 0.39
14 3mo8:A 127 17 0.1341 0.0866 0.6471 0.82 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
15 4mc5:C 497 37 0.1585 0.0262 0.3514 1.6 8gv7:A, 4k3x:B, 4k3x:D, 4k3x:F, 4mc5:A, 4mc5:B, 7wvg:A
16 8ab6:D 244 40 0.1707 0.0574 0.3500 2.6 8ab6:O, 8ab7:D, 8ab7:O, 8ab8:D, 8ab8:O, 8ab9:D, 8ab9:O, 8aba:D, 8aba:O, 8abb:D, 8abb:O, 8abe:D, 8abe:O, 8abf:D, 8abf:O, 8abg:D, 8abg:O, 8abh:D, 8abh:O, 8abi:D, 8abi:O, 8abj:D, 8abj:O, 8abk:D, 8abk:O, 8abl:D, 8abl:O, 8abm:D, 8abm:O, 8ac3:D, 8ac3:O, 8ac4:D, 8ac4:O, 8ac5:D, 8ac5:O
17 3hit:A 257 29 0.1220 0.0389 0.3448 5.5 3hit:B, 3hiv:A, 3hiv:B, 3hiw:A, 3hiw:B
18 4y0e:H 308 50 0.1585 0.0422 0.2600 6.8 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
19 6fwf:A 712 19 0.1098 0.0126 0.4737 7.1
20 5tky:A 597 29 0.1220 0.0168 0.3448 9.6 5tky:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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