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BioLiP
>protein
ASYSIGDLVFAKVKGYPPWPAKITKSNNKKYNVYFYGTGETANIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESA
LRG

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kcp:B 84 84 1.0000 0.9881 0.9881 2.79e-55 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
2 5xsk:A 90 84 0.5060 0.4667 0.5000 7.32e-20
3 6iit:B 100 85 0.4699 0.3900 0.4588 9.19e-17 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
4 3qj6:A 90 83 0.4337 0.4000 0.4337 6.26e-16 3qby:B
5 8cbn:L 86 80 0.3976 0.3837 0.4125 7.51e-16 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
6 9exw:A 148 49 0.2048 0.1149 0.3469 3.88e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
7 9exy:B 135 96 0.3494 0.2148 0.3021 4.87e-05 6ue6:C, 6ue6:F
8 4n4g:A 209 77 0.2892 0.1148 0.3117 8.03e-05 4n4h:A, 4n4i:A, 4ns5:A
9 5b73:A 313 71 0.2410 0.0639 0.2817 3.61e-04 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
10 5ciu:B 121 65 0.2169 0.1488 0.2769 0.003
11 5nrr:B 137 65 0.2169 0.1314 0.2769 0.005 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 6g2b:A 123 68 0.2289 0.1545 0.2794 0.013 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
13 3mo8:A 127 32 0.1446 0.0945 0.3750 0.042 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 1gq2:A 555 52 0.1928 0.0288 0.3077 0.54 1gq2:B, 1gq2:C, 1gq2:D, 1gq2:E, 1gq2:F, 1gq2:G, 1gq2:H, 1gq2:I, 1gq2:J, 1gq2:K, 1gq2:L, 1gq2:M, 1gq2:N, 1gq2:O, 1gq2:P
15 3hit:A 257 34 0.1325 0.0428 0.3235 2.3 3hit:B, 3hiv:A, 3hiv:B, 3hiw:A, 3hiw:B
16 7epk:A 426 87 0.2771 0.0540 0.2644 2.7
17 3p9t:A 213 30 0.1687 0.0657 0.4667 4.7
18 6mur:E 286 79 0.2410 0.0699 0.2532 5.3 6iqw:E, 6mus:E, 6mut:E, 6muu:E, 6o7e:E, 6o7h:E, 6o7i:E
19 8iuf:QD 241 32 0.1446 0.0498 0.3750 7.2 8iuf:Qd, 8iuj:QD, 8iuj:Qd
20 6fwf:A 712 19 0.1084 0.0126 0.4737 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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