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BioLiP
>protein
ASYSIGDLVFAKVKGYPPWPAKITKSNKKYNVYFYGTGETANIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESAL
RG

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6kcp:B 84 84 1.0000 0.9762 0.9762 2.30e-54 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
2 5xsk:A 90 84 0.4878 0.4444 0.4762 1.04e-18
3 6iit:B 100 85 0.4634 0.3800 0.4471 3.42e-16 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
4 8cbn:L 86 80 0.4024 0.3837 0.4125 5.57e-16 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
5 3qj6:A 90 83 0.4268 0.3889 0.4217 3.10e-15 3qby:B
6 9exw:A 148 49 0.2195 0.1216 0.3673 1.61e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
7 9exy:B 135 96 0.3659 0.2222 0.3125 3.91e-05 6ue6:C, 6ue6:F
8 4n4g:A 209 77 0.3049 0.1196 0.3247 0.001 4n4h:A, 4n4i:A, 4ns5:A
9 5ciu:B 121 65 0.2195 0.1488 0.2769 0.009
10 6g2b:A 123 68 0.2195 0.1463 0.2647 0.010 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
11 5nrr:B 137 80 0.2439 0.1460 0.2500 0.013 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 5b73:A 313 71 0.2439 0.0639 0.2817 0.013 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
13 3mo8:A 127 17 0.1341 0.0866 0.6471 0.89 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 3p9t:A 213 30 0.1707 0.0657 0.4667 4.5
15 6fwf:A 712 19 0.1098 0.0126 0.4737 7.6
16 4mc5:C 497 36 0.1585 0.0262 0.3611 7.9 8gv7:A, 4k3x:B, 4k3x:D, 4k3x:F, 4mc5:A, 4mc5:B, 7wvg:A
17 6j3f:A 254 52 0.2439 0.0787 0.3846 8.8 6j3f:B
18 3ua3:A 662 67 0.2439 0.0302 0.2985 9.5 3ua3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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