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BioLiP
>protein
ASYSIGDLVFAKVKGYPPWPAKITKSNKKYNVYFYGTGETANIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESAL
R

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6kcp:B 84 83 1.0000 0.9643 0.9759 1.65e-53 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
2 5xsk:A 90 84 0.4938 0.4444 0.4762 8.02e-19
3 6iit:B 100 84 0.4691 0.3800 0.4524 2.92e-16 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
4 8cbn:L 86 80 0.4074 0.3837 0.4125 4.66e-16 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
5 3qj6:A 90 83 0.4321 0.3889 0.4217 2.64e-15 3qby:B
6 9exw:A 148 49 0.2222 0.1216 0.3673 1.42e-05 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
7 9exy:B 135 96 0.3704 0.2222 0.3125 2.82e-05 6ue6:C, 6ue6:F
8 4n4g:A 209 77 0.3086 0.1196 0.3247 0.001 4n4h:A, 4n4i:A, 4ns5:A
9 5ciu:B 121 65 0.2222 0.1488 0.2769 0.008
10 6g2b:A 123 68 0.2222 0.1463 0.2647 0.009 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
11 5nrr:B 137 65 0.2222 0.1314 0.2769 0.013 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 5b73:A 313 71 0.2469 0.0639 0.2817 0.017 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
13 3mo8:A 127 29 0.1481 0.0945 0.4138 0.84 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 3p9t:A 213 30 0.1728 0.0657 0.4667 4.2
15 6fwf:A 712 19 0.1111 0.0126 0.4737 7.1
16 6j3f:A 254 52 0.2469 0.0787 0.3846 7.5 6j3f:B
17 4mc5:C 497 36 0.1605 0.0262 0.3611 7.8 8gv7:A, 4k3x:B, 4k3x:D, 4k3x:F, 4mc5:A, 4mc5:B, 7wvg:A
18 3ua3:A 662 67 0.2469 0.0302 0.2985 8.7 3ua3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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