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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACP
QDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGF
TNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRG
TFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGN
ALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPE
KLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL

The query sequence (length=452) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xr7:A 452 452 1.0000 1.0000 1.0000 0.0
2 7dex:A 460 460 0.4204 0.4130 0.4130 5.04e-122
3 2e1t:A 440 457 0.4226 0.4341 0.4179 5.49e-113 2e1t:B
4 5fal:A 435 407 0.2434 0.2529 0.2703 2.93e-23 5fan:A, 4kec:A
5 6lpv:A 434 464 0.2544 0.2650 0.2478 2.96e-21
6 5kjw:A 425 433 0.2412 0.2565 0.2517 1.65e-19 5kjw:B
7 5kjt:A 431 425 0.2235 0.2343 0.2376 1.02e-16 5kju:A
8 8h8i:A 431 442 0.2212 0.2320 0.2262 2.42e-16 8hbt:A
9 6wao:A 431 406 0.2080 0.2181 0.2315 1.03e-11
10 6mk2:A 407 406 0.1991 0.2211 0.2217 1.12e-11
11 6wao:B 406 407 0.2058 0.2291 0.2285 4.74e-11
12 8dqo:B 437 349 0.2102 0.2174 0.2722 1.61e-10 8dqo:A, 8dqp:A, 8dqp:B, 8dqq:A, 8dqq:B, 8dqr:A
13 6lpw:B 436 422 0.2190 0.2271 0.2346 1.24e-08
14 5hb3:C 709 108 0.0575 0.0367 0.2407 0.65 5hb3:A, 7tbi:D1, 7tbi:D2, 7tbi:D3, 7tbi:D4
15 3mbr:X 236 51 0.0354 0.0678 0.3137 0.74
16 6l5s:A 454 45 0.0376 0.0374 0.3778 1.1 6l5p:A, 6l5q:A, 6l5r:A, 6l7h:A
17 2qhf:A 392 34 0.0354 0.0408 0.4706 2.9 2o12:A
18 7oya:D1 288 41 0.0354 0.0556 0.3902 3.4 7oyb:D1
19 4xt2:A 116 48 0.0310 0.1207 0.2917 3.8
20 5mhn:B 685 42 0.0398 0.0263 0.4286 4.8 5mhm:A, 5mhm:B, 5mho:A, 5mho:B
21 4v3p:SE 263 31 0.0221 0.0380 0.3226 8.0 8ip8:fb, 8ip9:fb, 8ipa:fb, 8ipb:fb, 8jiw:BC, 8r6f:C, 4v7e:BC
22 7tdz:r 470 63 0.0354 0.0340 0.2540 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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