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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNA

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7z0r:A 81 80 1.0000 0.9877 1.0000 7.98e-57 7z0r:B, 7z0u:A
2 2ayd:A 76 62 0.4500 0.4737 0.5806 8.21e-23
3 1wj2:A 71 69 0.4625 0.5211 0.5362 3.81e-22 2lex:A
4 8iex:A 88 73 0.4000 0.3636 0.4384 1.67e-20
5 8k31:B 79 73 0.4000 0.4051 0.4384 6.42e-20
6 6j4g:B 58 60 0.3750 0.5172 0.5000 6.12e-17
7 6j4f:B 63 62 0.3750 0.4762 0.4839 2.02e-16 6j4f:F
8 5w3x:D 73 62 0.3500 0.3836 0.4516 1.22e-12 7p8k:B, 5w3x:B
9 7d11:A 79 63 0.3250 0.3291 0.4127 1.58e-12 6j4e:B
10 6ir8:A 69 60 0.3125 0.3623 0.4167 3.61e-12
11 4rdv:B 451 30 0.1500 0.0266 0.4000 3.6 3mdu:A, 3mdw:A, 3mdw:B, 3mdw:C, 3mdw:D, 4rdv:A, 4rdv:C, 4rdv:D, 4rdw:A, 4rzb:A, 4rzb:B
12 2ysm:A 111 33 0.1500 0.1081 0.3636 5.2
13 8tqm:A 843 29 0.1375 0.0130 0.3793 7.7
14 5cxy:A 292 33 0.1500 0.0411 0.3636 7.7 5bo6:A, 5bo6:B, 5bo7:A, 5bo7:B, 5bo9:A, 5bo9:B, 5cxy:B
15 3o3u:N 580 28 0.1125 0.0155 0.3214 8.3 2l7u:A, 7lml:A, 7lml:B, 7lmw:A, 7lmw:B, 2mov:A, 4oi7:A, 4oi8:A, 4oi8:B, 6xq1:A, 6xq1:B, 6xq3:A, 6xq3:B, 6xq5:A, 6xq5:B, 6xq6:A, 6xq6:B, 6xq7:A, 6xq7:B, 6xq8:A, 6xq8:B, 6xq9:A, 6xq9:B
16 5w1j:A 584 32 0.1250 0.0171 0.3125 9.9 5w1j:B, 5w1l:A, 5w1l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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