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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASTAKGYMNRVMVYAHRRRKARYLAPKNAHVRSPLAHKMPEEYGNTWDPRSGVEWHNRMRNRNHYRHWPWARWTDDPVRF
HQDSVCHRTVSALSTVANNGAPEWDYYAEVGQAYETPSHFPLSYTAPFIYQYTAQCWSREDLQSYLERIEQSSGLRTIAD
AASRREALYTWWHNAGMNVIPLGVLQHLELVSRDIVAQNARKSYRIEQHERGILRTPEMERYYALPHLRGPSMPVQLAQP
SGKYPSGKFTQMMEDVAIHPLQKPDARYKHNMYPA

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aih:Ao 275 275 1.0000 1.0000 1.0000 0.0 7ane:Ao
2 6hiv:BM 245 246 0.5273 0.5918 0.5894 8.11e-106 6hix:BM
3 7kjc:A 376 111 0.1018 0.0745 0.2523 4.0 8bin:A, 8bio:A, 8bk0:A, 8bm8:A, 8boc:A, 8bod:A, 8bof:A, 8bog:A, 8boh:A, 8boi:A, 8bok:A, 8bom:A, 6fnf:A, 6fng:A, 6fnh:A, 6fnh:B, 6fnh:C, 6hes:A, 6het:A, 6heu:A, 6hev:A, 6hew:A, 6hex:A, 6hey:A, 5i9v:A, 5i9w:A, 5i9x:A, 5i9y:A, 5i9z:A, 5ia0:A, 5ia0:B, 5ia0:C, 5ia1:A, 5ia2:A, 5ia3:A, 5ia4:A, 5ia5:A, 7kja:A, 7kja:B, 7kjc:B, 1mqb:A, 1mqb:B, 5njz:A, 5nk0:A, 5nk1:A, 5nk2:A, 5nk3:A, 5nk4:A, 5nk5:A, 5nk6:A, 5nk7:A, 5nk8:A, 5nk9:A, 5nka:A, 5nkb:A, 5nkc:A, 5nkd:A, 5nke:A, 5nkf:A, 5nkg:A, 5nkh:A, 5nki:A, 6q7b:A, 6q7c:A, 6q7d:A, 6q7e:A, 6q7f:A, 6q7g:A, 8qqy:A, 8xpv:A
4 6l9i:A 338 70 0.0727 0.0592 0.2857 4.3 6l9i:B, 6l9i:C, 6l9i:D, 6l9i:E, 6l9i:F
5 8btj:A 403 47 0.0473 0.0323 0.2766 5.3 8btj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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