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BioLiP
>protein
ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAY
LFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQ
VVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHG
PLDTTPIWSWPH

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lea:A 254 252 1.0000 0.9921 1.0000 0.0 4lea:B, 4led:A, 4led:B
2 4gc1:A 275 267 0.3254 0.2982 0.3071 1.35e-24 4gc1:B, 4gc2:B, 3m7j:A, 3m7j:B
3 4oit:B 107 78 0.1310 0.3084 0.4231 1.30e-10 4oit:A, 4oit:C, 4oit:D, 4oiz:B, 4oiz:C, 4oiz:A, 4oiz:E
4 4oit:B 107 109 0.1310 0.3084 0.3028 1.48e-04 4oit:A, 4oit:C, 4oit:D, 4oiz:B, 4oiz:C, 4oiz:A, 4oiz:E
5 3dzw:A 109 80 0.1151 0.2661 0.3625 5.83e-07 3dzw:B, 1npl:A
6 3dzw:A 109 72 0.1032 0.2385 0.3611 7.37e-05 3dzw:B, 1npl:A
7 3dzw:A 109 36 0.0556 0.1284 0.3889 0.22 3dzw:B, 1npl:A
8 3a0d:A 110 85 0.1151 0.2636 0.3412 1.92e-06 3a0e:A
9 3a0d:A 110 59 0.0913 0.2091 0.3898 0.003 3a0e:A
10 3a0d:A 110 46 0.0833 0.1909 0.4565 0.018 3a0e:A
11 3a0d:A 110 55 0.0635 0.1455 0.2909 1.9 3a0e:A
12 3a0d:A 110 55 0.0635 0.1455 0.2909 5.5 3a0e:A
13 4tkc:A 118 58 0.1111 0.2373 0.4828 9.57e-06
14 4tkc:A 118 33 0.0675 0.1441 0.5152 0.017
15 4tkc:A 118 53 0.0675 0.1441 0.3208 0.63
16 4tkc:A 118 109 0.1032 0.2203 0.2385 3.2
17 1bwu:D 109 68 0.0992 0.2294 0.3676 1.86e-05 1bwu:Q
18 1bwu:D 109 146 0.1587 0.3670 0.2740 1.29e-04 1bwu:Q
19 1bwu:D 109 57 0.0833 0.1927 0.3684 0.003 1bwu:Q
20 1bwu:D 109 27 0.0556 0.1284 0.5185 0.47 1bwu:Q
21 1bwu:D 109 51 0.0595 0.1376 0.2941 0.51 1bwu:Q
22 1kj1:A 109 68 0.0992 0.2294 0.3676 7.37e-05 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
23 1kj1:A 109 88 0.1151 0.2661 0.3295 0.002 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
24 1kj1:A 109 57 0.0833 0.1927 0.3684 0.019 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
25 1kj1:A 109 27 0.0556 0.1284 0.5185 0.83 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
26 1kj1:A 109 51 0.0556 0.1284 0.2745 2.5 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
27 1kj1:A 109 58 0.0675 0.1560 0.2931 2.6 1bwu:A, 1bwu:P, 1kj1:D, 1kj1:P, 1kj1:Q
28 1msa:A 109 76 0.1032 0.2385 0.3421 1.69e-04 1jpc:A, 1msa:D, 1msa:B, 1msa:C, 1niv:A, 1niv:C
29 1msa:A 109 60 0.1071 0.2477 0.4500 0.006 1jpc:A, 1msa:D, 1msa:B, 1msa:C, 1niv:A, 1niv:C
30 1msa:A 109 33 0.0595 0.1376 0.4545 0.097 1jpc:A, 1msa:D, 1msa:B, 1msa:C, 1niv:A, 1niv:C
31 1msa:A 109 45 0.0516 0.1193 0.2889 5.4 1jpc:A, 1msa:D, 1msa:B, 1msa:C, 1niv:A, 1niv:C
32 5d9z:B 112 38 0.0635 0.1429 0.4211 0.22 5d5g:B, 5t20:J, 5t20:B, 5t20:N, 5t20:D, 5t20:L, 5t20:F, 5t20:P, 5t20:H
33 7tei:B 1042 104 0.1111 0.0269 0.2692 0.36
34 8xus:B 1063 104 0.1111 0.0263 0.2692 0.38 8if2:B
35 5d5g:A 109 75 0.0873 0.2018 0.2933 0.54 5d9z:A, 5t20:A, 5t20:C, 5t20:E, 5t20:G, 5t20:I, 5t20:K, 5t20:M, 5t20:O
36 5d5g:A 109 85 0.0952 0.2202 0.2824 3.8 5d9z:A, 5t20:A, 5t20:C, 5t20:E, 5t20:G, 5t20:I, 5t20:K, 5t20:M, 5t20:O
37 1qwz:A 235 75 0.0833 0.0894 0.2800 0.59 4lfd:A, 4lfd:B, 4lfd:C, 4lfd:D, 1qx6:A, 1qxa:A
38 3wgy:B 324 29 0.0635 0.0494 0.5517 0.79 3wgq:A, 3wgz:B
39 3qw9:A 170 44 0.0714 0.1059 0.4091 1.1
40 7rnu:C 110 45 0.0714 0.1636 0.4000 1.8 7rnu:A, 7rnu:E, 7rnu:G
41 6kbw:A 446 128 0.1230 0.0695 0.2422 3.7 6kbw:B
42 5yhv:A 394 39 0.0556 0.0355 0.3590 4.1 5yhv:B, 5yhv:C, 5yhv:D
43 7wtl:CL 610 55 0.0754 0.0311 0.3455 4.9 5wyj:B1, 5wyk:B1
44 7ajt:CL 781 55 0.0754 0.0243 0.3455 5.0 7d5s:RJ, 6zqa:CL, 6zqb:CL, 6zqc:CL
45 7suk:SI 802 55 0.0754 0.0237 0.3455 5.3 7d63:RJ, 6ke6:RJ, 6lqp:RJ, 6lqq:RJ, 6lqr:RJ, 6lqu:RJ, 6lqv:RJ, 5wlc:SI
46 5k9h:A 554 50 0.0675 0.0307 0.3400 5.3
47 7d4i:RJ 738 55 0.0754 0.0257 0.3455 5.6 7d5t:RJ, 6lqs:RJ, 6lqt:RJ
48 3mgu:A 533 54 0.0754 0.0356 0.3519 5.8
49 7jji:A 1109 104 0.1032 0.0234 0.2500 6.0 8aaa:A, 7b62:A, 7beh:E, 7bem:E, 8bec:B, 8bec:D, 7d2z:B, 7d30:B, 7dwy:A, 7dwy:B, 7dwy:C, 7e7b:A, 7e7b:B, 7e7b:C, 7f5g:C, 8j1q:C, 8j26:C, 7jji:C, 7jji:B, 7kmh:C, 7l2c:B, 7l4z:B, 7l4z:D, 7l4z:A, 7l4z:C, 7l4z:E, 7ldj:A, 7ly3:A, 7ly3:B, 7q0i:D, 8qh0:A, 7qur:A, 7qur:B, 7qur:C, 7qus:A, 7qus:B, 7qus:C, 7r6w:R, 7sn0:C, 7wd8:B, 7wgv:A, 7wgv:B, 7wgv:C, 7wk8:A, 7x08:A, 7x08:B, 7x08:C, 7x2l:E, 7x93:G, 7xtz:A, 7xtz:C, 7xtz:B, 7xu0:C, 7xu0:B, 7xu1:A, 7xu6:A, 7xu6:C, 7xu6:B, 7xwa:D, 7y0c:E, 7y0c:R, 7yck:A, 7z8o:A, 7zbu:A, 6zp2:A, 6zp2:C, 6zp2:B
50 7fe0:C 189 35 0.0556 0.0741 0.4000 7.4 7fe6:C
51 3tii:B 313 81 0.0754 0.0607 0.2346 7.9 3tig:A, 3tii:A, 3tin:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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